CreateRunOptions.R 13.5 KB
Newer Older
Delaigue Olivier's avatar
Delaigue Olivier committed
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
CreateRunOptions <- function(FUN_MOD,InputsModel,IndPeriod_WarmUp=NULL,IndPeriod_Run,IniStates=NULL,IniResLevels=NULL,
                             Outputs_Cal=NULL,Outputs_Sim="all",RunSnowModule=TRUE,MeanAnSolidPrecip=NULL,quiet=FALSE){


  ObjectClass <- NULL;

  ##check_FUN_MOD
    BOOL <- FALSE;
    if(identical(FUN_MOD,RunModel_GR4H)){
      ObjectClass <- c(ObjectClass,"GR","hourly"); 
      BOOL <- TRUE; 
    }
    if(identical(FUN_MOD,RunModel_GR4J) | identical(FUN_MOD,RunModel_GR5J) | identical(FUN_MOD,RunModel_GR6J)){
      ObjectClass <- c(ObjectClass,"GR","daily"); 
      BOOL <- TRUE; 
    }
    if(identical(FUN_MOD,RunModel_GR2M)){
      ObjectClass <- c(ObjectClass,"GR","monthly"); 
      BOOL <- TRUE; 
    }
    if(identical(FUN_MOD,RunModel_GR1A)){
      ObjectClass <- c(ObjectClass,"GR","yearly"); 
      BOOL <- TRUE; 
    }
    if(identical(FUN_MOD,RunModel_CemaNeige)){
      ObjectClass <- c(ObjectClass,"CemaNeige","daily");
      BOOL <- TRUE; 
    }
    if(identical(FUN_MOD,RunModel_CemaNeigeGR4J) | identical(FUN_MOD,RunModel_CemaNeigeGR5J) | identical(FUN_MOD,RunModel_CemaNeigeGR6J)){
      ObjectClass <- c(ObjectClass,"GR","CemaNeige","daily");
      BOOL <- TRUE; 
    }
    if(!BOOL){ stop("incorrect FUN_MOD for use in CreateRunOptions \n"); return(NULL); } 


  ##check_InputsModel
    if(!inherits(InputsModel,"InputsModel")){
      stop("InputsModel must be of class 'InputsModel' \n"); return(NULL); } 
    if("GR" %in% ObjectClass & !inherits(InputsModel,"GR")){
      stop("InputsModel must be of class 'GR' \n"); return(NULL); } 
    if("CemaNeige" %in% ObjectClass & !inherits(InputsModel,"CemaNeige")){
      stop("InputsModel must be of class 'CemaNeige' \n"); return(NULL); } 
    if("hourly" %in% ObjectClass & !inherits(InputsModel,"hourly")){
      stop("InputsModel must be of class 'hourly' \n"); return(NULL); } 
    if("daily" %in% ObjectClass & !inherits(InputsModel,"daily")){
      stop("InputsModel must be of class 'daily' \n"); return(NULL); } 
    if("monthly" %in% ObjectClass & !inherits(InputsModel,"monthly")){
      stop("InputsModel must be of class 'monthly' \n"); return(NULL); } 
    if("yearly" %in% ObjectClass & !inherits(InputsModel,"yearly")){
      stop("InputsModel must be of class 'yearly' \n"); return(NULL); } 


  ##check_IndPeriod_Run
    if(!is.vector( IndPeriod_Run)){ stop("IndPeriod_Run must be a vector of numeric values \n"); return(NULL); } 
    if(!is.numeric(IndPeriod_Run)){ stop("IndPeriod_Run must be a vector of numeric values \n"); return(NULL); } 
    if(identical(as.integer(IndPeriod_Run),as.integer(seq(from=IndPeriod_Run[1],to=tail(IndPeriod_Run,1),by=1)))==FALSE){
      stop("IndPeriod_Run must be a continuous sequence of integers \n"); return(NULL); } 
    if(storage.mode(IndPeriod_Run)!="integer"){ stop("IndPeriod_Run should be of type integer \n"); return(NULL); } 


  ##check_IndPeriod_WarmUp
    WTxt <- NULL;
    if(is.null(IndPeriod_WarmUp)){
      WTxt <- paste(WTxt,"\t Model warm-up period not defined -> default configuration used \n",sep="");
      ##If_the_run_period_starts_at_the_very_beginning_of_the_time_series
      if(IndPeriod_Run[1]==as.integer(1)){
        IndPeriod_WarmUp <- as.integer(0);
        WTxt <- paste(WTxt,"\t    No data were found for model warm-up! \n",sep="");
      ##We_look_for_the_longest_period_preceeding_the_run_period_with_a_maximum_of_one_year
      } else {
        TmpDateR <- InputsModel$DatesR[IndPeriod_Run[1]] - 365*24*60*60; ### minimal date to start the warmup        
        IndPeriod_WarmUp <- which(InputsModel$DatesR==max(InputsModel$DatesR[1],TmpDateR)) : (IndPeriod_Run[1]-1); 
        if("hourly"  %in% ObjectClass){ TimeStep <- as.integer(          60*60); }
        if("daily"   %in% ObjectClass){ TimeStep <- as.integer(       24*60*60); }
        if("monthly" %in% ObjectClass){ TimeStep <- as.integer( 30.44*24*60*60); }
        if("yearly"  %in% ObjectClass){ TimeStep <- as.integer(365.25*24*60*60); }
        if(length(IndPeriod_WarmUp)*TimeStep/(365*24*60*60)>=1){ 
        WTxt <- paste(WTxt,"\t    The year preceding the run period is used \n",sep="");
        } else {
        WTxt <- paste(WTxt,"\t    Less than a year (without missing values) was found for model warm-up: \n",sep="");
        WTxt <- paste(WTxt,"\t    (",length(IndPeriod_WarmUp)," time-steps are used for initialisation) \n",sep=""); 
        }
      }
    }
    if(!is.null(IndPeriod_WarmUp)){
      if(!is.vector( IndPeriod_WarmUp)){ stop("IndPeriod_Run must be a vector of numeric values \n"); return(NULL); } 
      if(!is.numeric(IndPeriod_WarmUp)){ stop("IndPeriod_Run must be a vector of numeric values \n"); return(NULL); } 
      if(storage.mode(IndPeriod_WarmUp)!="integer"){ stop("IndPeriod_Run should be of type integer \n"); return(NULL); } 
      if(identical(IndPeriod_WarmUp,as.integer(0))){
        WTxt <- paste(WTxt,"\t No warm-up period is used! \n",sep=""); }
      if((IndPeriod_Run[1]-1)!=tail(IndPeriod_WarmUp,1) & !identical(IndPeriod_WarmUp,as.integer(0))){ 
        WTxt <- paste(WTxt,"\t Model warm-up period is not directly before the model run period \n",sep=""); }
    }
    if(!is.null(WTxt) & !quiet){ warning(WTxt); }


  ##check_IniStates_and_IniResLevels
    if(is.null(IniStates) & is.null(IniResLevels) & !quiet){ 
      warning("\t Model states initialisation not defined -> default configuration used \n"); }
    if("CemaNeige" %in% ObjectClass){ NLayers <- length(InputsModel$LayerPrecip); } else { NLayers <- 0; }
    NState <- NULL;
    if("GR" %in% ObjectClass | "CemaNeige" %in% ObjectClass){ 
103
104
      if("hourly"  %in% ObjectClass){ NState <- 3*24*20 + 7; }
      if("daily"   %in% ObjectClass){ if (identical(FUN_MOD,RunModel_GR5J)){NState <- 2*20 + 2*NLayers + 7; } else {NState <- 3*20 + 2*NLayers + 7; }}
Delaigue Olivier's avatar
Delaigue Olivier committed
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
      if("monthly" %in% ObjectClass){ NState <- 2; }
      if("yearly"  %in% ObjectClass){ NState <- 1; }
    }
    if(!is.null(IniStates)){
      if(!is.vector( IniStates)   ){ stop("IniStates must be a vector of numeric values \n"); return(NULL);  }
      if(!is.numeric(IniStates)   ){ stop("IniStates must be a vector of numeric values \n"); return(NULL);  }
      if(length(IniStates)!=NState){ stop(paste("The length of IniStates must be ",NState," for the chosen FUN_MOD \n",sep="")); return(NULL);  }
    } else {
      IniStates <- as.double(rep(0.0,NState));
    }
    if("GR" %in% ObjectClass & ("monthly" %in% ObjectClass | "daily" %in% ObjectClass | "hourly" %in% ObjectClass)){
      if(!is.null(IniResLevels)){
        if(!is.vector(IniResLevels) ){ stop("IniResLevels must be a vector of numeric values \n"); return(NULL);  }
        if(!is.numeric(IniResLevels)){ stop("IniResLevels must be a vector of numeric values \n"); return(NULL);  }
        if(length(IniResLevels)!=2 ) { stop("The length of IniStates must be 2 for the chosen FUN_MOD \n"); return(NULL);  }
      } else {
        IniResLevels <- as.double(c(0.3,0.5));
      }
    } else {
      if(!is.null(IniResLevels)){ stop("IniResLevels can only be used with monthly or daily or hourly GR models \n") }
    }


  ##check_Outputs_Cal_and_Sim

    ##Outputs_all
      Outputs_all <- NULL;
      if(identical(FUN_MOD,RunModel_GR4H)){
        Outputs_all <- c(Outputs_all,"PotEvap","Precip","Prod","AE","Perc","PR","Q9","Q1","Rout","Exch","AExch","QR","QD","Qsim"); }
      if(identical(FUN_MOD,RunModel_GR4J) | identical(FUN_MOD,RunModel_CemaNeigeGR4J)){
        Outputs_all <- c(Outputs_all,"PotEvap","Precip","Prod","AE","Perc","PR","Q9","Q1","Rout","Exch","AExch","QR","QD","Qsim"); }
      if(identical(FUN_MOD,RunModel_GR5J) | identical(FUN_MOD,RunModel_CemaNeigeGR5J)){
        Outputs_all <- c(Outputs_all,"PotEvap","Precip","Prod","AE","Perc","PR","Q9","Q1","Rout","Exch","AExch","QR","QD","Qsim"); }
      if(identical(FUN_MOD,RunModel_GR6J) | identical(FUN_MOD,RunModel_CemaNeigeGR6J)){
        Outputs_all <- c(Outputs_all,"PotEvap","Precip","Prod","AE","Perc","PR","Q9","Q1","Rout","Exch","AExch","QR","QR1","Exp","QD","Qsim"); }
      if(identical(FUN_MOD,RunModel_GR2M)){
141
        Outputs_all <- c(Outputs_all,"PotEvap","Precip","AE","Perc","P3","Exch","Prod","Rout","Qsim"); }
Delaigue Olivier's avatar
Delaigue Olivier committed
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
      if(identical(FUN_MOD,RunModel_GR1A)){
        Outputs_all <- c(Outputs_all,"PotEvap","Precip","Qsim"); }
      if("CemaNeige" %in% ObjectClass){
        Outputs_all <- c(Outputs_all,"Pliq","Psol","SnowPack","ThermalState","Gratio","PotMelt","Melt","PliqAndMelt"); }

    ##check_Outputs_Sim
      if(!is.vector(   Outputs_Sim)){ stop("Outputs_Sim must be a vector of characters \n"); return(NULL);  }
      if(!is.character(Outputs_Sim)){ stop("Outputs_Sim must be a vector of characters \n"); return(NULL);  }
      if(sum(is.na(Outputs_Sim))!=0){ stop("Outputs_Sim must not contain NA \n"); return(NULL);  }
      if("all" %in% Outputs_Sim){ Outputs_Sim <- c("DatesR",Outputs_all,"StateEnd");  }
      Test <- which(Outputs_Sim %in% c("DatesR",Outputs_all,"StateEnd") == FALSE); if(length(Test)!=0){ 
        stop(paste("Outputs_Sim is incorrectly defined: ",paste(Outputs_Sim[Test],collapse=", ")," not found \n",sep="")); return(NULL); } 
      Outputs_Sim <- Outputs_Sim[!duplicated(Outputs_Sim)];

    ##check_Outputs_Cal
      if(is.null(Outputs_Cal)){
        if("GR" %in% ObjectClass                               ){ Outputs_Cal <- c("Qsim"); }
        if("CemaNeige" %in% ObjectClass                        ){ Outputs_Cal <- c("all"); }
        if("GR" %in% ObjectClass & "CemaNeige" %in% ObjectClass){ Outputs_Cal <- c("PliqAndMelt","Qsim"); }
      } else {
        if(!is.vector(   Outputs_Cal)){ stop("Outputs_Cal must be a vector of characters \n"); return(NULL);  }
        if(!is.character(Outputs_Cal)){ stop("Outputs_Cal must be a vector of characters \n"); return(NULL);  }
        if(sum(is.na(Outputs_Cal))!=0){ stop("Outputs_Cal must not contain NA \n"); return(NULL);  }
      }
      if("all" %in% Outputs_Cal){ Outputs_Cal <- c("DatesR",Outputs_all,"StateEnd");  }
      Test <- which(Outputs_Cal %in% c("DatesR",Outputs_all,"StateEnd") == FALSE); if(length(Test)!=0){ 
        stop(paste("Outputs_Cal is incorrectly defined: ",paste(Outputs_Cal[Test],collapse=", ")," not found \n",sep="")); return(NULL); } 
      Outputs_Cal <- Outputs_Cal[!duplicated(Outputs_Cal)];


  ##check_RunSnowModule
    if("CemaNeige" %in% ObjectClass){
      if(!is.vector( RunSnowModule)){ stop("RunSnowModule must be a single boolean \n"); return(NULL);  }
      if(!is.logical(RunSnowModule)){ stop("RunSnowModule must be either TRUE or FALSE \n"); return(NULL);  }
      if(length(RunSnowModule)!=1  ){ stop("RunSnowModule must be either TRUE or FALSE \n"); return(NULL);  }
    }


  ##check_MeanAnSolidPrecip
    if("CemaNeige" %in% ObjectClass & is.null(MeanAnSolidPrecip)){
      NLayers <- length(InputsModel$LayerPrecip);
      SolidPrecip <- NULL; for(iLayer in 1:NLayers){
        if(iLayer==1){ SolidPrecip <- InputsModel$LayerFracSolidPrecip[[1]]*InputsModel$LayerPrecip[[iLayer]]/NLayers;
              } else { SolidPrecip <- SolidPrecip + InputsModel$LayerFracSolidPrecip[[iLayer]]*InputsModel$LayerPrecip[[iLayer]]/NLayers; } }
      Factor <- NULL;
      if(inherits(InputsModel,"hourly" )){ Factor <- 365.25*24; }
      if(inherits(InputsModel,"daily"  )){ Factor <-    365.25; }
      if(inherits(InputsModel,"monthly")){ Factor <-        12; }
      if(inherits(InputsModel,"yearly" )){ Factor <-         1; }
      if(is.null(Factor)){ stop("InputsModel must be of class 'hourly', 'daily', 'monthly' or 'yearly' \n"); return(NULL);  }
      MeanAnSolidPrecip <- rep(mean(SolidPrecip)*Factor,NLayers); ### default value: same Gseuil for all layers
      if(!quiet){ warning("\t MeanAnSolidPrecip not defined -> it was automatically set to c(",paste(round(MeanAnSolidPrecip),collapse=","),") \n"); }
    }
    if("CemaNeige" %in% ObjectClass & !is.null(MeanAnSolidPrecip)){
      if(!is.vector( MeanAnSolidPrecip)    ){ stop(paste("MeanAnSolidPrecip must be a vector of numeric values \n",sep="")); return(NULL);  }
      if(!is.numeric(MeanAnSolidPrecip)    ){ stop(paste("MeanAnSolidPrecip must be a vector of numeric values \n",sep="")); return(NULL);  }
      if(length(MeanAnSolidPrecip)!=NLayers){ stop(paste("MeanAnSolidPrecip must be a numeric vector of length ",NLayers," \n",sep="")); return(NULL);  }
    }


  ##check_PliqAndMelt
    if(RunSnowModule & "GR" %in% ObjectClass & "CemaNeige" %in% ObjectClass){
      if("PliqAndMelt" %in% Outputs_Cal == FALSE & "all" %in% Outputs_Cal == FALSE){
        WTxt <- NULL;
        WTxt <- paste(WTxt,"\t PliqAndMelt was not defined in Outputs_Cal but is needed to feed the hydrological model with the snow module outputs \n",sep="");
        WTxt <- paste(WTxt,"\t -> it was automatically added \n",sep="");
        if(!is.null(WTxt) & !quiet){ warning(WTxt); }
        Outputs_Cal <- c(Outputs_Cal,"PliqAndMelt"); }
      if("PliqAndMelt" %in% Outputs_Sim == FALSE & "all" %in% Outputs_Sim == FALSE){
        WTxt <- NULL;
        WTxt <- paste(WTxt,"\t PliqAndMelt was not defined in Outputs_Sim but is needed to feed the hydrological model with the snow module outputs \n",sep="");
        WTxt <- paste(WTxt,"\t -> it was automatically added \n",sep="");
        if(!is.null(WTxt) & !quiet){ warning(WTxt); }
        Outputs_Sim <- c(Outputs_Sim,"PliqAndMelt"); }
    }


  ##Create_RunOptions
    RunOptions <- list(IndPeriod_WarmUp=IndPeriod_WarmUp,IndPeriod_Run=IndPeriod_Run,IniStates=IniStates,IniResLevels=IniResLevels,
                       Outputs_Cal=Outputs_Cal,Outputs_Sim=Outputs_Sim);
    if("CemaNeige" %in% ObjectClass){
        RunOptions <- c(RunOptions,list(RunSnowModule=RunSnowModule,MeanAnSolidPrecip=MeanAnSolidPrecip));    }
    class(RunOptions) <- c("RunOptions",ObjectClass);
    return(RunOptions);


}