From ac915da34d7de9d0ce3f205738f0822a649b310b Mon Sep 17 00:00:00 2001
From: Dorchies David <david.dorchies@inrae.fr>
Date: Tue, 6 Apr 2021 16:45:34 +0200
Subject: [PATCH] ci: dependencies issue
Refs #86
---
.gitlab-ci.yml | 27 +--------------------------
1 file changed, 1 insertion(+), 26 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 9e885306..5769a6eb 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,5 +1,4 @@
stages:
- - update_packages
- build
- regression
- tests
@@ -14,16 +13,7 @@ default:
- echo "setwd(\"$(pwd)\")" > .Rprofile
- PATH=~/R/sources/R-${R_VERSION}/bin:$PATH
- rename "s/${R_VERSION}.airGR/airGR/" *.tar.gz
- - R -e 'chooseCRANmirror(graphics = FALSE, ind = 1); pkg <- "caRamel"; pkgInst <- installed.packages()[, "Package"]; pkgMiss <- setdiff(pkg, pkgInst); if (length(pkgMiss) > 0) install.packages(pkgMiss)'
-
-.update_packages:
- stage: update_packages
- only:
- refs:
- - tags
- - schedules
- script:
- - Rscript -e "update.packages(ask=FALSE, repos=\"http://cran.r-project.org\")"
+ - R -e 'remotes::install_deps(dep = T)'
.build:
stage: build
@@ -63,11 +53,6 @@ default:
AS_CRAN: "true"
extends: .check
-update_packages_patched:
- variables:
- R_VERSION: "patched"
- extends: .update_packages
-
build_patched:
variables:
R_VERSION: "patched"
@@ -104,11 +89,6 @@ check_as_cran_patched:
R_VERSION: "patched"
extends: .check_as_cran
-update_packages_devel:
- variables:
- R_VERSION: "devel"
- extends: .update_packages
-
build_devel:
only:
refs:
@@ -136,11 +116,6 @@ check_as_cran_devel:
R_VERSION: "devel"
extends: .check_as_cran
-update_packages_oldrel:
- variables:
- R_VERSION: "oldrel"
- extends: .update_packages
-
build_oldrel:
only:
refs:
--
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