From cb53f93e27f80beee64f7a89792a7703375865d3 Mon Sep 17 00:00:00 2001
From: Delaigue Olivier <olivier.delaigue@irstea.fr>
Date: Fri, 7 Apr 2023 09:39:40 +0200
Subject: [PATCH] fix: remove 'Rmalschains' from the 'Suggests' list - avoid
Error because the package is removed from the CRAN - silenced the package in
the 'param_optim' vignette Refs: #172
---
DESCRIPTION | 2 +-
vignettes/V02.1_param_optim.Rmd | 8 +++++++-
2 files changed, 8 insertions(+), 2 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index 9a698c67..fa95aeb6 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -28,7 +28,7 @@ Imports:
utils
Suggests:
knitr, markdown, rmarkdown,
- caRamel, coda, DEoptim, FME, ggmcmc, hydroPSO, Rmalschains,
+ caRamel, coda, DEoptim, FME, ggmcmc, hydroPSO,
GGally, ggplot2,
testthat
Description: Hydrological modelling tools developed at INRAE-Antony (HYCAR Research Unit, France). The package includes several conceptual rainfall-runoff models (GR4H, GR5H, GR4J, GR5J, GR6J, GR2M, GR1A) that can be applied either on a lumped or semi-distributed way. A snow accumulation and melt model (CemaNeige) and the associated functions for the calibration and evaluation of models are also included. Use help(airGR) for package description and references.
diff --git a/vignettes/V02.1_param_optim.Rmd b/vignettes/V02.1_param_optim.Rmd
index 7ded6941..717253c1 100644
--- a/vignettes/V02.1_param_optim.Rmd
+++ b/vignettes/V02.1_param_optim.Rmd
@@ -14,7 +14,7 @@ vignette: >
library(airGR)
library(DEoptim)
library(hydroPSO) # Needs R version >= 3.6 or latticeExtra <= 0.6-28 on R 3.5
-library(Rmalschains)
+# library(Rmalschains) # removed from CRAN since 2023-04-03
library(caRamel)
library(ggplot2)
library(GGally)
@@ -172,6 +172,12 @@ optPSO <- hydroPSO::hydroPSO(fn = OptimGR4J,
## MA-LS-Chains
+```{r, warning=FALSE, results='hide', message=FALSE, eval=FALSE}
+# to install the package temporary removde from CRAN
+# Rtools needed (windows : https://cran.r-project.org/bin/windows/Rtools/)
+install.packages("https://cran.r-project.org/src/contrib/Archive/Rmalschains/Rmalschains_0.2-8.tar.gz",
+ repos = NULL, type = "source", dependencies = TRUE)
+```
```{r, warning=FALSE, results='hide', eval=FALSE}
optMALS <- Rmalschains::malschains(fn = OptimGR4J,
lower = lowerGR4J, upper = upperGR4J,
--
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