From 3014fb30f4459e2d22cb1e1d729d2f8d072bc5ca Mon Sep 17 00:00:00 2001
From: unknown <olivier.delaigue@ANPI1430.antony.irstea.priv>
Date: Fri, 7 Apr 2017 10:18:28 +0200
Subject: [PATCH] v0.1.2.21 the shiny.ShimGR function has been renamed into
ShinyGR
---
DESCRIPTION | 2 +-
INDEX | 2 +-
NAMESPACE | 2 +-
R/ShinyGR.R | 18 +
R/Utils.R | 8 +-
R/shiny.SimGR.R | 18 -
inst/{shinySimGR => ShinyGR}/server.R | 23 +-
inst/{shinySimGR => ShinyGR}/ui.R | 100 +-
.../www/about_airGRteaching.html | 0
.../www/about_airGRteaching.md | 0
.../www/about_airGRteaching.rmd | 0
.../www/about_code.html | 6 +-
.../{shinySimGR => ShinyGR}/www/about_code.md | 6 +-
.../www/about_code.rmd | 6 +-
.../figure-html/unnamed-chunk-10-1.png | Bin
.../figure-html/unnamed-chunk-5-1.png | Bin
.../figure-html/unnamed-chunk-6-1.png | Bin
.../figure-html/unnamed-chunk-7-1.png | Bin
.../figure-html/unnamed-chunk-8-1.png | Bin
.../figure-html/unnamed-chunk-9-1.png | Bin
.../www/airGR_graphe_fonctions_EN.svg | 0
.../www/authors_airGR-teaching.html | 0
.../www/authors_airGR-teaching.md | 0
.../www/authors_airGR-teaching.rmd | 0
.../www/bootstrap.min_Cyborg.css | 0
.../www/bootstrap.min_United.css | 0
.../www/dyplot_Sim_GR.html | 0
.../www/interface_using.md | 0
.../www/interface_using.rmd | 0
inst/{shinySimGR => ShinyGR}/www/logo_R.svg | 0
.../www/logo_airGR.svg | 0
.../www/logo_airGR_square.svg | 0
.../www/logo_airGRteaching.svg | 0
.../www/logo_airGRteaching_square.svg | 0
.../www/logo_irstea.svg | 0
.../www/logo_irstea_hydro.svg | 0
.../www/logo_irstea_hydro_square.svg | 0
.../www/logo_irstea_square.svg | 0
.../www/photo_brigode_pierre.jpg | Bin
.../www/photo_coron_laurent.jpg | Bin
.../www/photo_delaigue_olivier.jpg | Bin
.../www/photo_michel_claude.jpg | Bin
.../www/photo_perrin_charles.jpg | Bin
.../www/photo_thirel_guillaume.jpg | Bin
inst/shinySimGR4J/server.R | 74 -
inst/shinySimGR4J/ui.R | 69 -
inst/shinySimGR4J/www/logo_airGR.svg | 109 -
inst/shinySimGR4J/www/logo_irstea.svg | 97 -
inst/shinySimGR4J/www/logo_irstea_hydro.svg | 2165 -----------------
man/{shiny.SimGR.Rd => ShinyGR.Rd} | 8 +-
50 files changed, 97 insertions(+), 2616 deletions(-)
create mode 100644 R/ShinyGR.R
delete mode 100644 R/shiny.SimGR.R
rename inst/{shinySimGR => ShinyGR}/server.R (86%)
rename inst/{shinySimGR => ShinyGR}/ui.R (75%)
rename inst/{shinySimGR => ShinyGR}/www/about_airGRteaching.html (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_airGRteaching.md (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_airGRteaching.rmd (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_code.html (99%)
rename inst/{shinySimGR => ShinyGR}/www/about_code.md (96%)
rename inst/{shinySimGR => ShinyGR}/www/about_code.rmd (96%)
rename inst/{shinySimGR => ShinyGR}/www/about_code_files/figure-html/unnamed-chunk-10-1.png (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_code_files/figure-html/unnamed-chunk-5-1.png (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_code_files/figure-html/unnamed-chunk-6-1.png (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_code_files/figure-html/unnamed-chunk-7-1.png (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_code_files/figure-html/unnamed-chunk-8-1.png (100%)
rename inst/{shinySimGR => ShinyGR}/www/about_code_files/figure-html/unnamed-chunk-9-1.png (100%)
rename inst/{shinySimGR => ShinyGR}/www/airGR_graphe_fonctions_EN.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/authors_airGR-teaching.html (100%)
rename inst/{shinySimGR => ShinyGR}/www/authors_airGR-teaching.md (100%)
rename inst/{shinySimGR => ShinyGR}/www/authors_airGR-teaching.rmd (100%)
rename inst/{shinySimGR => ShinyGR}/www/bootstrap.min_Cyborg.css (100%)
rename inst/{shinySimGR => ShinyGR}/www/bootstrap.min_United.css (100%)
rename inst/{shinySimGR => ShinyGR}/www/dyplot_Sim_GR.html (100%)
rename inst/{shinySimGR => ShinyGR}/www/interface_using.md (100%)
rename inst/{shinySimGR => ShinyGR}/www/interface_using.rmd (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_R.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_airGR.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_airGR_square.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_airGRteaching.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_airGRteaching_square.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_irstea.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_irstea_hydro.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_irstea_hydro_square.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/logo_irstea_square.svg (100%)
rename inst/{shinySimGR => ShinyGR}/www/photo_brigode_pierre.jpg (100%)
rename inst/{shinySimGR => ShinyGR}/www/photo_coron_laurent.jpg (100%)
rename inst/{shinySimGR => ShinyGR}/www/photo_delaigue_olivier.jpg (100%)
rename inst/{shinySimGR => ShinyGR}/www/photo_michel_claude.jpg (100%)
rename inst/{shinySimGR => ShinyGR}/www/photo_perrin_charles.jpg (100%)
rename inst/{shinySimGR => ShinyGR}/www/photo_thirel_guillaume.jpg (100%)
delete mode 100644 inst/shinySimGR4J/server.R
delete mode 100644 inst/shinySimGR4J/ui.R
delete mode 100644 inst/shinySimGR4J/www/logo_airGR.svg
delete mode 100644 inst/shinySimGR4J/www/logo_irstea.svg
delete mode 100644 inst/shinySimGR4J/www/logo_irstea_hydro.svg
rename man/{shiny.SimGR.Rd => ShinyGR.Rd} (93%)
diff --git a/DESCRIPTION b/DESCRIPTION
index 7faf495..6c8269c 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
Package: airGRteaching
Type: Package
Title: Tools to Simplify the Use of the airGR Hydrological Package for Education (Including a Shiny Application)
-Version: 0.1.2.20
+Version: 0.1.2.21
Date: 2017-04-07
Authors@R: c(person("Olivier", "Delaigue", role = c("aut", "cre"), email = "airGR@irstea.fr"), person("Laurent", "Coron", role = c("aut")), person("Pierre", "Brigode", role = c("aut")), person("Guillaume", "Thirel", role = c("ctb")))
Depends: airGR (>= 1.0.5.22)
diff --git a/INDEX b/INDEX
index b50e7fa..623e899 100644
--- a/INDEX
+++ b/INDEX
@@ -24,5 +24,5 @@ plot.SimGR Synthetic plotting of model outputs
Shiny interface:
====================
-shiny.SimGR Interactive Web applications to run the GR4J, GR5J and GR6J
+ShinyGR Interactive Web applications to run the GR4J, GR5J and GR6J
hydrological models whith or without CemaNeige
diff --git a/NAMESPACE b/NAMESPACE
index cb6c178..f17e153 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -28,7 +28,7 @@ export(dyplot.default)
export(dyplot.ObsGR)
export(dyplot.CalGR)
export(dyplot.SimGR)
-export(shiny.SimGR)
+export(ShinyGR)
export(.TypeModelGR)
diff --git a/R/ShinyGR.R b/R/ShinyGR.R
new file mode 100644
index 0000000..590ca3c
--- /dev/null
+++ b/R/ShinyGR.R
@@ -0,0 +1,18 @@
+ShinyGR <- function(ObsBV = NULL, DatesR = NULL, Precip = NULL, PotEvap = NULL, Qobs = NULL, TempMean = NULL,
+ ZInputs = NULL, HypsoData = NULL, NLayers = 5,
+ Param = c(200, 0, 100, 2), WupPer = NULL, SimPer = NULL,
+ theme = "RStudio") {
+
+
+ .GlobalEnv$.ShinyGR.args <- list(ObsBV = as.list(ObsBV),
+ DatesR = DatesR, Precip = Precip, PotEvap = PotEvap, Qobs = Qobs, TempMean = TempMean,
+ ZInputs = ZInputs, HypsoData = HypsoData, NLayers = NLayers,
+ Param = Param, WupPer = WupPer, SimPer = SimPer,
+ theme = theme)
+
+ on.exit(rm(.ShinyGR.args, envir = .GlobalEnv))
+
+ shiny::runApp(system.file("ShinyGR", package = "airGRteaching"), launch.browser = TRUE)
+ return(NULL)
+
+}
diff --git a/R/Utils.R b/R/Utils.R
index f9808ce..9a86b3a 100644
--- a/R/Utils.R
+++ b/R/Utils.R
@@ -5,10 +5,8 @@
## =================================================================================
if (getRversion() >= "2.15.1") {
- utils::globalVariables(c(".SimGR.args"))
- utils::suppressForeignCheck(c(".SimGR.args"))
- utils::globalVariables(c(".SimGR4J.args"))
- utils::suppressForeignCheck(c(".SimGR4J.args"))
+ utils::globalVariables(c(".ShinyGR.args"))
+ utils::suppressForeignCheck(c(".ShinyGR.args"))
}
@@ -103,7 +101,7 @@ DiagramGR4J <- function(OutputsModel, Param, SimPer, EventDate) {
par(col.axis = par("fg"), cex.axis = 1.2, cex.lab = 1.2)
- if (.GlobalEnv$.SimGR.args$theme == "Cyborg") {
+ if (.GlobalEnv$.ShinyGR.args$theme == "Cyborg") {
col_mod_bg <- rgb(255-245, 255-245, 255-245, maxColorValue = 255)
col_mod_bd <- rgb(255-231, 255-231, 255-231, maxColorValue = 255)
}
diff --git a/R/shiny.SimGR.R b/R/shiny.SimGR.R
deleted file mode 100644
index a54bced..0000000
--- a/R/shiny.SimGR.R
+++ /dev/null
@@ -1,18 +0,0 @@
-shiny.SimGR <- function(ObsBV = NULL, DatesR = NULL, Precip = NULL, PotEvap = NULL, Qobs = NULL, TempMean = NULL,
- ZInputs = NULL, HypsoData = NULL, NLayers = 5,
- Param = c(200, 0, 100, 2), WupPer = NULL, SimPer = NULL,
- theme = "RStudio") {
-
-
- .GlobalEnv$.SimGR.args <- list(ObsBV = as.list(ObsBV),
- DatesR = DatesR, Precip = Precip, PotEvap = PotEvap, Qobs = Qobs, TempMean = TempMean,
- ZInputs = ZInputs, HypsoData = HypsoData, NLayers = NLayers,
- Param = Param, WupPer = WupPer, SimPer = SimPer,
- theme = theme)
-
- on.exit(rm(.SimGR.args, envir = .GlobalEnv))
-
- shiny::runApp(system.file("shinySimGR", package = "airGRteaching"), launch.browser = TRUE)
- return(NULL)
-
-}
diff --git a/inst/shinySimGR/server.R b/inst/ShinyGR/server.R
similarity index 86%
rename from inst/shinySimGR/server.R
rename to inst/ShinyGR/server.R
index 2ec7db3..7f9bcc1 100644
--- a/inst/shinySimGR/server.R
+++ b/inst/ShinyGR/server.R
@@ -12,17 +12,17 @@ shinyServer(function(input, output, session) {
OBS <- ObsGR(ObsBV = get(input$Dataset), TypeModel = input$TypeModel,
CemaNeige = input$CemaNeige == "CemaNeige",
- Precip = .SimGR.args$Precip, PotEvap = .SimGR.args$PotEvap, Qobs = get(input$Dataset), TempMean = .SimGR.args$TempMean,
- ZInputs = .SimGR.args$ZInputs, HypsoData = .SimGR.args$HypsoData,
- NLayers = .SimGR.args$NLayers)
+ Precip = .ShinyGR.args$Precip, PotEvap = .ShinyGR.args$PotEvap, Qobs = get(input$Dataset), TempMean = .ShinyGR.args$TempMean,
+ ZInputs = .ShinyGR.args$ZInputs, HypsoData = .ShinyGR.args$HypsoData,
+ NLayers = .ShinyGR.args$NLayers)
return(list(TMGR = TMGR, OBS = OBS))
})
-
+
observeEvent(input$CalButton, {
TMGR <- getPrep()$TMGR
OBS <- getPrep()$OBS
- CAL <- CalGR(ObsGR = OBS, WupPer = .SimGR.args$WupPer, CalPer = substr(c(input$Period[1], input$Period[2]), 1, 10), verbose = FALSE)
+ CAL <- CalGR(ObsGR = OBS, WupPer = .ShinyGR.args$WupPer, CalPer = substr(c(input$Period[1], input$Period[2]), 1, 10), verbose = FALSE)
PARAM <- CAL$OutputsCalib$ParamFinalR
updateSliderInput(session, inputId = "X1", value = PARAM[1L])
updateSliderInput(session, inputId = "X2", value = PARAM[2L])
@@ -54,14 +54,14 @@ shinyServer(function(input, output, session) {
if (input$CemaNeige == "CemaNeige") {
PARAM <- c(PARAM, input$C1, input$C2)
}
-
+
list_CRIT <- c("ErrorCrit_NSE", "ErrorCrit_KGE")
list_TRSF <- c("NO", "log", "sqrt")
SIM <- lapply(list_CRIT, function(iCRIT) {
SIM_transfo <- lapply(list_TRSF, function(iTRSF) {
iTRSF <- gsub("NO", "", iTRSF)
- iSIM <- SimGR(ObsGR = OBS, Param = PARAM, WupPer = .SimGR.args$WupPer, SimPer = substr(c(input$Period[1], input$Period[2]), 1, 10), transfo = iTRSF, verbose = FALSE)
+ iSIM <- SimGR(ObsGR = OBS, Param = PARAM, WupPer = .ShinyGR.args$WupPer, SimPer = substr(c(input$Period[1], input$Period[2]), 1, 10), transfo = iTRSF, verbose = FALSE)
iCRIT <- ErrorCrit(InputsCrit = iSIM$OptionsCrit, OutputsModel = iSIM$OutputsModel, FUN_CRIT = get(iCRIT), verbose = FALSE)
iCRIT <- iCRIT[c("CritName", "CritValue")]
return(list(SIM = iSIM, CRIT = iCRIT))
@@ -81,7 +81,7 @@ shinyServer(function(input, output, session) {
rownames(CRIT) <- NULL
CRIT$Value <- as.numeric(CRIT$Value)
CRIT$Criteria <- gsub("\\[", " [", CRIT$Criteria)
-
+
# suppressWarnings(rm(list = ls()[!ls() %in% c("PARAM", "SIM", "CRIT")]))
# gc()
return(list(PARAM = PARAM, SIM = SIM$ErrorCrit_KGE$NO$SIM, Crit = CRIT))
@@ -96,14 +96,14 @@ shinyServer(function(input, output, session) {
"State variables" = 3,
"Model diagram" = 4)
})
-
+
output$myPlot <- renderPlot({
OutputsModel <- getRES()$SIM$OutputsModel
RunOptions <- getRES()$SIM$OptionsSimul
- if (.GlobalEnv$.SimGR.args$theme == "Cyborg") {
+ if (.GlobalEnv$.ShinyGR.args$theme == "Cyborg") {
par(bg = "black", fg = "white", col.axis = "white", col.lab = "white")
}
@@ -132,9 +132,6 @@ shinyServer(function(input, output, session) {
if (getPlotType() == 2) {
par(mfrow = c(1, 1), par(oma = c(7, 2, 3, 0)))
- # plot(OutputsModel$DatesR[IndPlot], getRES()$SIM$Qobs[IndPlot], type = "l", lwd = 1, col = "black", xlab = "", ylab = "flow [mm/d]")
- # lines(OutputsModel$DatesR[IndPlot], OutputsModel$Qsim[IndPlot], lwd = 1, col = "orangered")
- # legend("topright", bty = "n", c("obs.", "sim."), col = c("black", "orangered"), lwd = 2)
plot(OutputsModel, Qobs = getRES()$SIM$Qobs, IndPeriod_Plot = IndPlot, which = "Flows", cex.lab = 1.4, cex.axis = 1.5, cex.leg = 1.5)
}
diff --git a/inst/shinySimGR/ui.R b/inst/ShinyGR/ui.R
similarity index 75%
rename from inst/shinySimGR/ui.R
rename to inst/ShinyGR/ui.R
index 6a09058..52426ae 100644
--- a/inst/shinySimGR/ui.R
+++ b/inst/ShinyGR/ui.R
@@ -10,7 +10,7 @@ navbarPage(title = div("airGRteaching",
windowTitle = "airGRteaching",
- theme = switch(.GlobalEnv$.SimGR.args$theme,
+ theme = switch(.GlobalEnv$.ShinyGR.args$theme,
RStudio = "",
United = "bootstrap.min_United.css",
Cyborg = "bootstrap.min_Cyborg.css"),
@@ -28,7 +28,7 @@ navbarPage(title = div("airGRteaching",
h4("Choose a dataset:"),
fluidRow(
- column(12, selectInput("Dataset", label = NULL, choices = .SimGR.args$ObsBV))
+ column(12, selectInput("Dataset", label = NULL, choices = .ShinyGR.args$ObsBV))
),
h4("Choose a model:"),
@@ -47,25 +47,25 @@ navbarPage(title = div("airGRteaching",
min = 0,
max = 2500,
step = 10,
- value = .SimGR.args$Param[1L]),
+ value = .ShinyGR.args$Param[1L]),
sliderInput("X2", label = "X2 (intercatchment exchange coeff.)",
post = " [mm/d]",
min = -4,
max = +4,
step = 0.05,
- value = .SimGR.args$Param[2L]),
+ value = .ShinyGR.args$Param[2L]),
sliderInput("X3", label = "X3 (routing store capacity)",
post = " [mm]",
min = 0,
max = 1000,
step = 5,
- value = .SimGR.args$Param[3L]),
+ value = .ShinyGR.args$Param[3L]),
sliderInput("X4", label = "X4 (unit hydrograph time constant)",
post = " [d]",
min = 0.5,
max = 10,
step = 0.1,
- value = .SimGR.args$Param[4L])),
+ value = .ShinyGR.args$Param[4L])),
conditionalPanel(condition = "input.TypeModel == 'GR5J' || input.TypeModel =='GR6J'",
sliderInput("X5", label = "X5 (intercatchment exchange threshold)",
@@ -73,7 +73,7 @@ navbarPage(title = div("airGRteaching",
min = -4,
max = 3,
step = 0.05,
- value = .SimGR.args$Param[5L])),
+ value = .ShinyGR.args$Param[5L])),
conditionalPanel(condition = "input.TypeModel == 'GR6J'",
sliderInput("X6", label = "X6 (coeff. for emptying exponential store)",
@@ -81,7 +81,7 @@ navbarPage(title = div("airGRteaching",
min = 0,
max = 20,
step = 0.5,
- value = .SimGR.args$Param[6L])),
+ value = .ShinyGR.args$Param[6L])),
conditionalPanel(condition = "input.CemaNeige == 'CemaNeige'",
sliderInput("C1", label = "C1 (weighting coeff. for snow pack thermal state)",
@@ -89,14 +89,14 @@ navbarPage(title = div("airGRteaching",
min = 0,
max = 1,
step = 0.01,
- value = .SimGR.args$Param[length(.SimGR.args$Param)-1]),
+ value = .ShinyGR.args$Param[length(.ShinyGR.args$Param)-1]),
sliderInput("C2", label = "C2 (degree-day melt coefficient)",
post = " [mm/°C/d]",
min = 0,
max = 10,
step = 0.5,
- value = .SimGR.args$Param[length(.SimGR.args$Param)])),
+ value = .ShinyGR.args$Param[length(.ShinyGR.args$Param)])),
h4("Automatic calibration:"),
@@ -117,9 +117,9 @@ navbarPage(title = div("airGRteaching",
conditionalPanel(condition = "input.PlotType != 'Model diagram'",
column(4, offset = 1,
sliderInput("Period", label = "Select the time window:",
- min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- value = as.POSIXct(.SimGR.args$SimPer, tz = "UTC"),
+ min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ value = as.POSIXct(.ShinyGR.args$SimPer, tz = "UTC"),
timeFormat = "%F",
timezone = "+0000",
animate = TRUE)
@@ -128,9 +128,9 @@ navbarPage(title = div("airGRteaching",
# conditionalPanel(condition = "input.PlotType == 'Model diagram'",
# column(4, offset = 1,
# sliderInput("Period", label = "Select the time window:",
- # min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- # max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- # value = as.POSIXct(.SimGR.args$SimPer, tz = "UTC"),
+ # min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ # max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ # value = as.POSIXct(.ShinyGR.args$SimPer, tz = "UTC"),
# timeFormat = "%F",
# timezone = "+0000",
# animate = FALSE)
@@ -139,9 +139,9 @@ navbarPage(title = div("airGRteaching",
# conditionalPanel(condition = "input.PlotType == 'Model diagram' & input.TypeModel =='GR4H'",
# column(4, offset = 0,
# sliderInput("Event", label = "Select the target date:",
- # min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- # max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- # value = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
+ # min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ # max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ # value = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
# timeFormat = "%F",
# timezone = "+0000",
# animate = animationOptions(interval = 500),
@@ -151,49 +151,49 @@ navbarPage(title = div("airGRteaching",
conditionalPanel(condition = "input.PlotType == 'Model diagram' & (input.TypeModel =='GR4J' || input.TypeModel =='GR5J' || input.TypeModel =='GR6J')",
column(4, offset = 1,
sliderInput("Period", label = "Select the time window:",
- min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- value = as.POSIXct(.SimGR.args$SimPer, tz = "UTC"),
+ min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ value = as.POSIXct(.ShinyGR.args$SimPer, tz = "UTC"),
timeFormat = "%F",
timezone = "+0000",
animate = FALSE)
),
column(4, offset = 0,
sliderInput("Event", label = "Select the target date:",
- min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- value = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
+ min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ value = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
timeFormat = "%F",
timezone = "+0000",
animate = animationOptions(interval = 500),
step = 3600 * 24)
)
- # ),
- # conditionalPanel(condition = "input.PlotType == 'Model diagram' & input.TypeModel =='GR2M'",
- # column(4, offset = 0,
- # sliderInput("Event", label = "Select the target date:",
- # min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- # max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- # value = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- # timeFormat = "%F",
- # timezone = "+0000",
- # animate = animationOptions(interval = 500),
- # step = 3600 * 24 * 31)
- # )
- # ),
- # conditionalPanel(condition = "input.PlotType == 'Model diagram' & input.TypeModel =='GR1A'",
- # column(4, offset = 0,
- # sliderInput("Event", label = "Select the target date:",
- # min = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- # max = as.POSIXct(.SimGR.args$SimPer[2L], tz = "UTC"),
- # value = as.POSIXct(.SimGR.args$SimPer[1L], tz = "UTC"),
- # timeFormat = "%F",
- # timezone = "+0000",
- # animate = animationOptions(interval = 500),
- # step = 3600 * 24 * 31 * 12)
- # )
+ # ),
+ # conditionalPanel(condition = "input.PlotType == 'Model diagram' & input.TypeModel =='GR2M'",
+ # column(4, offset = 0,
+ # sliderInput("Event", label = "Select the target date:",
+ # min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ # max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ # value = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ # timeFormat = "%F",
+ # timezone = "+0000",
+ # animate = animationOptions(interval = 500),
+ # step = 3600 * 24 * 31)
+ # )
+ # ),
+ # conditionalPanel(condition = "input.PlotType == 'Model diagram' & input.TypeModel =='GR1A'",
+ # column(4, offset = 0,
+ # sliderInput("Event", label = "Select the target date:",
+ # min = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ # max = as.POSIXct(.ShinyGR.args$SimPer[2L], tz = "UTC"),
+ # value = as.POSIXct(.ShinyGR.args$SimPer[1L], tz = "UTC"),
+ # timeFormat = "%F",
+ # timezone = "+0000",
+ # animate = animationOptions(interval = 500),
+ # step = 3600 * 24 * 31 * 12)
+ # )
)
-
+
),
fluidRow(column(10, plotOutput("myPlot", width = "100%", height = "665px") ), #800
column(02, tableOutput("Criteria"))
diff --git a/inst/shinySimGR/www/about_airGRteaching.html b/inst/ShinyGR/www/about_airGRteaching.html
similarity index 100%
rename from inst/shinySimGR/www/about_airGRteaching.html
rename to inst/ShinyGR/www/about_airGRteaching.html
diff --git a/inst/shinySimGR/www/about_airGRteaching.md b/inst/ShinyGR/www/about_airGRteaching.md
similarity index 100%
rename from inst/shinySimGR/www/about_airGRteaching.md
rename to inst/ShinyGR/www/about_airGRteaching.md
diff --git a/inst/shinySimGR/www/about_airGRteaching.rmd b/inst/ShinyGR/www/about_airGRteaching.rmd
similarity index 100%
rename from inst/shinySimGR/www/about_airGRteaching.rmd
rename to inst/ShinyGR/www/about_airGRteaching.rmd
diff --git a/inst/shinySimGR/www/about_code.html b/inst/ShinyGR/www/about_code.html
similarity index 99%
rename from inst/shinySimGR/www/about_code.html
rename to inst/ShinyGR/www/about_code.html
index 2ff0e2c..60d278e 100644
--- a/inst/shinySimGR/www/about_code.html
+++ b/inst/ShinyGR/www/about_code.html
@@ -233,8 +233,8 @@ $(document).ready(function () {
</div>
<div id="shiny-interface" class="section level3">
<h3><em>Shiny</em> interface</h3>
-<p>The <strong><font color="#009EE0">airGRteaching</font></strong> package also provide the <code>shiny.SimGR()</code> function, which allows to run the <em>Shiny</em> interface that is proposed on this website.</p>
-<p>The <code>shiny.SimGR()</code> function just needs:</p>
+<p>The <strong><font color="#009EE0">airGRteaching</font></strong> package also provide the <code>ShinyGR()</code> function, which allows to run the <em>Shiny</em> interface that is proposed on this website.</p>
+<p>The <code>ShinyGR()</code> function just needs:</p>
<ul>
<li><code>ObsBV</code>: a name of a <code>data.frame</code> (or a <code>list</code> of names)</li>
<li><code>SimPer</code>: a vector of 2 dates to define the simulation period</li>
@@ -248,7 +248,7 @@ $(document).ready(function () {
<ul>
<li><code>WupPer</code>: a vector of 2 dates to define the warm-up period</li>
</ul>
-<pre class="r"><code>shiny.SimGR(ObsBV = "BasinObs", SimPer = c("1994-01-01", "1998-12-31"))</code></pre>
+<pre class="r"><code>ShinyGR(ObsBV = "BasinObs", SimPer = c("1994-01-01", "1998-12-31"))</code></pre>
<p>Only daily models are currently available GR4J, GR5J, GR6J + CemaNeige).</p>
<p>It is also possible to change the interface look; different thema are propose (argument <code>theme</code>).</p>
<p>XXXX SCREENSHOTS</p>
diff --git a/inst/shinySimGR/www/about_code.md b/inst/ShinyGR/www/about_code.md
similarity index 96%
rename from inst/shinySimGR/www/about_code.md
rename to inst/ShinyGR/www/about_code.md
index a31805d..4728b82 100644
--- a/inst/shinySimGR/www/about_code.md
+++ b/inst/ShinyGR/www/about_code.md
@@ -189,9 +189,9 @@ dyplot(SIM)
### *Shiny* interface
-The <strong><font color="#009EE0">airGRteaching</font></strong> package also provide the `shiny.SimGR()` function, which allows to run the *Shiny* interface that is proposed on this website.
+The <strong><font color="#009EE0">airGRteaching</font></strong> package also provide the `ShinyGR()` function, which allows to run the *Shiny* interface that is proposed on this website.
-The `shiny.SimGR()` function just needs:
+The `ShinyGR()` function just needs:
* `ObsBV`: a name of a `data.frame` (or a `list` of names)
* `SimPer`: a vector of 2 dates to define the simulation period
@@ -208,7 +208,7 @@ You can obviously define your an other objective function or a warm-up period:
```r
-shiny.SimGR(ObsBV = "BasinObs", SimPer = c("1994-01-01", "1998-12-31"))
+ShinyGR(ObsBV = "BasinObs", SimPer = c("1994-01-01", "1998-12-31"))
```
Only daily models are currently available GR4J, GR5J, GR6J + CemaNeige).
diff --git a/inst/shinySimGR/www/about_code.rmd b/inst/ShinyGR/www/about_code.rmd
similarity index 96%
rename from inst/shinySimGR/www/about_code.rmd
rename to inst/ShinyGR/www/about_code.rmd
index 5ae7d9b..bd16c8c 100644
--- a/inst/shinySimGR/www/about_code.rmd
+++ b/inst/ShinyGR/www/about_code.rmd
@@ -173,9 +173,9 @@ dyplot(SIM)
### *Shiny* interface
-The `r airGRteaching` package also provide the `shiny.SimGR()` function, which allows to run the *Shiny* interface that is proposed on this website.
+The `r airGRteaching` package also provide the `ShinyGR()` function, which allows to run the *Shiny* interface that is proposed on this website.
-The `shiny.SimGR()` function just needs:
+The `ShinyGR()` function just needs:
* `ObsBV`: a name of a `data.frame` (or a `list` of names)
* `SimPer`: a vector of 2 dates to define the simulation period
@@ -191,7 +191,7 @@ You can obviously define your an other objective function or a warm-up period:
* `WupPer`: a vector of 2 dates to define the warm-up period
```{r, eval=FALSE}
-shiny.SimGR(ObsBV = "BasinObs", SimPer = c("1994-01-01", "1998-12-31"))
+ShinyGR(ObsBV = "BasinObs", SimPer = c("1994-01-01", "1998-12-31"))
```
Only daily models are currently available GR4J, GR5J, GR6J + CemaNeige).
diff --git a/inst/shinySimGR/www/about_code_files/figure-html/unnamed-chunk-10-1.png b/inst/ShinyGR/www/about_code_files/figure-html/unnamed-chunk-10-1.png
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diff --git a/inst/shinySimGR/www/dyplot_Sim_GR.html b/inst/ShinyGR/www/dyplot_Sim_GR.html
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diff --git a/inst/shinySimGR/www/logo_R.svg b/inst/ShinyGR/www/logo_R.svg
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diff --git a/inst/shinySimGR/www/photo_perrin_charles.jpg b/inst/ShinyGR/www/photo_perrin_charles.jpg
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rename from inst/shinySimGR/www/photo_perrin_charles.jpg
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diff --git a/inst/shinySimGR/www/photo_thirel_guillaume.jpg b/inst/ShinyGR/www/photo_thirel_guillaume.jpg
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diff --git a/inst/shinySimGR4J/server.R b/inst/shinySimGR4J/server.R
deleted file mode 100644
index 2ce1f6b..0000000
--- a/inst/shinySimGR4J/server.R
+++ /dev/null
@@ -1,74 +0,0 @@
-# server.R
-
-shinyServer(function(input, output) {
-
-
- output$myPlot <- renderPlot({
-
- Param <- c(input$X1, input$X2, input$X3, input$X4)
-
- # SIM <- SimGR(ObsGR = ObsGR, Param = Param, WupPer = WupPer, SimPer = SimPer)
- SIM <- SimGR(ObsGR = .SimGR4J.args$ObsGR, Param = Param, WupPer = .SimGR4J.args$WupPer, SimPer = .SimGR4J.args$SimPer, verbose = FALSE)
-
- OutputsModel <- SIM$OutputsModel
- RunOptions <- SIM$OptionsSimul
-
- getplotType <- reactive({
- switch(input$plotType,
- "time series" = 1,
- "synthesis" = 2)#,
- # "user-defined" = 3)
- })
-
- LLL <- length(OutputsModel$Qsim)
- PosInd <- round(input$WindowPosition*LLL)
- WinInd <- round(input$WindowFraction*LLL)
- WinInd <- ifelse(WinInd < 2, 2, WinInd)
- # if (WinInd < 2) {
- # WinInd <- 2
- # }
- IndStart <- PosInd - ((WinInd-1) %/% 2 + (WinInd-1) %% 2)
- IndStart2 <- IndStart
- IndStop <- PosInd + ((WinInd-1) %/% 2)
- IndStop2 <- IndStop
- if (IndStart < 1) {
- IndStart2 <- 1
- IndStop2 <- IndStop +diff(c(IndStart, 1))
- }
- if (IndStop > LLL) {
- IndStop2 <- LLL
- IndStart2 <- IndStart-diff(c(LLL, IndStop))
- }
- IndPlot <- seq(from = IndStart2, to = IndStop2, by = 1)
-
- if (getplotType() == 1) {
- par(mfrow = c(1, 1))#SIM$Qobs[RunOptions$IndPeriod_Run][IndPlot]
- plot(OutputsModel$DatesR[IndPlot], SIM$Qobs[IndPlot], type = "l", lwd = 1, col = "black", xlab = "", ylab = "Q [mm/d]")
- lines(OutputsModel$DatesR[IndPlot], OutputsModel$Qsim[IndPlot], lwd = 1, col = "red")
- legend("topright", bty = "n", c("obs.", "sim."), col = c("black", "red"), lwd = 2)
- mtext(side = 3, line = 1, paste("Period ", format(OutputsModel$DatesR[IndPlot[1]], "%d/%m/%Y"), " - ", format(OutputsModel$DatesR[tail(IndPlot, 1)], "%d/%m/%Y"), sep = ""))
- }
- if (getplotType() == 2) {
- plot(OutputsModel, Qobs = SIM$Qobs, IndPeriod_Plot = IndPlot)
- }
- # if (getplotType() == 3) {
- # Tmp <- FALSE
- # if (exists("plot_UserDefined")) {
- # if (is.function(plot_UserDefined)) {
- # Tmp <- TRUE
- # }
- # }
- # if (Tmp) {
- # plot_UserDefined(OutputsModel, IndPlot)
- # } else {
- # par(mfrow = c(1, 1))
- # plot(c(-10, +10), c(-10, +10), type = "n", xlab = "", ylab = "", xaxt = "n", yaxt = "n")
- # text(0, 0, "Error: the function 'plot_UserDefined' has not been defined")
- # }
- # }
-
-
- })
-
-})
-
diff --git a/inst/shinySimGR4J/ui.R b/inst/shinySimGR4J/ui.R
deleted file mode 100644
index dd7bb71..0000000
--- a/inst/shinySimGR4J/ui.R
+++ /dev/null
@@ -1,69 +0,0 @@
-# ui.R
-
-shinyUI(fluidPage(
- titlePanel("GR4J hydrological model"),
- sidebarLayout( position="left",
- sidebarPanel(
- strong("Free parameters values:"), p(""),
- sliderInput("X1",
- "X1 (production store capacity)",
- min = 0,
- max = 5000,
- step = 10,
- value = .SimGR4J.args$Param[1L]),
- sliderInput("X2",
- "X2 (intercatchment exchange coeff.)",
- min = -4,
- max = +3,
- step = 0.05,
- value = .SimGR4J.args$Param[2L]),
- sliderInput("X3",
- "X3 (routing store capacity)",
- min = 0,
- max = 1000,
- step = 5,
- value = .SimGR4J.args$Param[3L]),
- sliderInput("X4",
- "X4 (unit hydrograph time constant)",
- min = 0.5,
- max = 5,
- step = 0.1,
- value = .SimGR4J.args$Param[4L]),
- br(), br(),
- img(src = "logo_irstea.svg", #"https://webgr.irstea.fr/wp-content/uploads/2016/05/logo_airGR.svg",
- height = 500/6),
- img(src = "logo_irstea_hydro.svg", #"https://webgr.irstea.fr/wp-content/uploads/2016/05/logo_airGR.svg",
- height = 500/6),
- img(src = "logo_airGR.svg", #"https://webgr.irstea.fr/wp-content/uploads/2016/05/logo_airGR.svg",
- height = 500/6)
- )
- ,
- mainPanel(
-
- fluidRow(
- column(3,
- selectInput("plotType", "Choose a type of plot:",
- choices = c("synthesis", "time series"))#, "user-defined"))
- ),
- column(3,
- sliderInput("WindowFraction",
- "Fraction of time series to plot",
- min = 0,
- max = 1,
- value = 1)
- ),
- column(3,
- sliderInput("WindowPosition",
- "Position of the time window",
- min = 0,
- max = 1,
- value = 0.5,
- animate = TRUE)
- )
- ),
-
- plotOutput("myPlot")
-
- )
- )
-))
diff --git a/inst/shinySimGR4J/www/logo_airGR.svg b/inst/shinySimGR4J/www/logo_airGR.svg
deleted file mode 100644
index 901ba81..0000000
--- a/inst/shinySimGR4J/www/logo_airGR.svg
+++ /dev/null
@@ -1,109 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<!-- Created with Inkscape (http://www.inkscape.org/) -->
-
-<svg
- xmlns:dc="http://purl.org/dc/elements/1.1/"
- xmlns:cc="http://creativecommons.org/ns#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:svg="http://www.w3.org/2000/svg"
- xmlns="http://www.w3.org/2000/svg"
- xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
- xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
- id="svg2"
- version="1.1"
- inkscape:version="0.91 r13725"
- xml:space="preserve"
- width="210.5"
- height="204.09399"
- viewBox="0 0 210.5 204.09399"
- sodipodi:docname="logo_airGR.svg"
- inkscape:export-filename="\\anasdata.cemagref.fr\Projets\hban\Equipes\Hydro\ADMINISTRATIF\EQUIPE\PRATIQUE\Logo\airGR\path14.png"
- inkscape:export-xdpi="90"
- inkscape:export-ydpi="90"><metadata
- id="metadata8"><rdf:RDF><cc:Work
- rdf:about=""><dc:format>image/svg+xml</dc:format><dc:type
- rdf:resource="http://purl.org/dc/dcmitype/StillImage" /><dc:title></dc:title></cc:Work></rdf:RDF></metadata><defs
- id="defs6" /><sodipodi:namedview
- pagecolor="#d5d5d5"
- bordercolor="#666666"
- borderopacity="1"
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diff --git a/man/shiny.SimGR.Rd b/man/ShinyGR.Rd
similarity index 93%
rename from man/shiny.SimGR.Rd
rename to man/ShinyGR.Rd
index c6cbca8..2c6dc44 100644
--- a/man/shiny.SimGR.Rd
+++ b/man/ShinyGR.Rd
@@ -1,11 +1,11 @@
\encoding{UTF-8}
-\name{shiny.SimGR}
-\alias{shiny.SimGR}
+\name{ShinyGR}
+\alias{ShinyGR}
\title{Interactive web application to run manually the GR4,5,6J hydrological models whith or without CemaNeige}
\usage{
-shiny.SimGR(ObsBV = NULL, DatesR = NULL, Precip = NULL, PotEvap = NULL,
+ShinyGR(ObsBV = NULL, DatesR = NULL, Precip = NULL, PotEvap = NULL,
Qobs = NULL, TempMean = NULL,
ZInputs = NULL, HypsoData = NULL, NLayers = 5,
Param, WupPer = NULL, SimPer,
@@ -64,7 +64,7 @@ BasinObs2 <- BasinObs[, c("DatesR", "P", "E", "Qmm", "T")]
## Interactive simulation step using default parameters
if (interactive()) {
- shiny.SimGR(ObsBV = "BasinObs2", SimPer = c("1994-01-01", "1998-12-31"))
+ ShinyGR(ObsBV = "BasinObs2", SimPer = c("1994-01-01", "1998-12-31"))
}
}
--
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