Merge branch '37-update-ci-yaml-file-to-take-tinto-account-the-changes-made-in-airgr' into 'dev'

Resolve "Update CI yaml file to take into account the changes made in airGR"

Closes #37

See merge request !14

.gitlab-ci.yml

 stages:
-  - update_packages
-  - build
-  - tests
+  - check
 
 default:
   before_script:
     - echo "setwd(\"$(pwd)\")" > .Rprofile
+    - echo ".libPaths <- c(Sys.getenv(\"R_LIBS_USER\"), .libPaths())" >> .Rprofile
     - PATH=~/R/sources/R-${R_VERSION}/bin:$PATH
-    - rename "s/${R_VERSION}.airGRteaching/airGRteaching/" *.tar.gz
-    - R -e 'chooseCRANmirror(graphics = FALSE, ind = 1); pkg <- "remotes"; pkgInst <- installed.packages()[, "Package"]; pkgMiss <- setdiff(pkg, pkgInst); if (length(pkgMiss) > 0) install.packages(pkgMiss)'
     - R -e 'remotes::install_git("https://gitlab.irstea.fr/HYCAR-Hydro/airgr", ref = "dev")'
-    - R -e 'chooseCRANmirror(graphics = FALSE, ind = 1); pkg <- c("dygraphs", "plotrix", "shiny", "shinyjs"); pkgInst <- installed.packages()[, "Package"]; pkgMiss <- setdiff(pkg, pkgInst); if (length(pkgMiss) > 0) install.packages(pkgMiss)'
+    - R -e 'remotes::install_deps(dep = "Imports")'
 
-.update_packages:
-  stage: update_packages
-  only:
-    refs:
-      - tags
-      - schedules
+.check:
+  stage: check
   script:
-    - Rscript -e "update.packages(ask=FALSE, repos=\"http://cran.r-project.org\")"
-
-.build:
-  stage: build
-  script:
-    - cd ..
-    - echo "setwd(\"$(pwd)\")" > .Rprofile
-    - R CMD build airgrteaching
-    - rename "s/airGRteaching/${R_VERSION}.airGRteaching/" airGRteaching_*.tar.gz
-    - mv *.tar.gz airgrteaching/
-  artifacts:
-    untracked: true
-    expire_in: 1 week
+  - R -e ' rcmdcheck::rcmdcheck(args = ifelse(as.logical(Sys.getenv("NOT_CRAN")), "", "--as-cran"), error_on = "error")'
 
 .check_as_cran:
-  stage: tests
-  script:
-    - R CMD check --as-cran airGRteaching_*.tar.gz
-
-update_packages_patched:
   variables:
-    R_VERSION: "patched"
-  extends: .update_packages
-
-update_packages_devel:
-  variables:
-    R_VERSION: "devel"
-  extends: .update_packages
-
-update_packages_oldrel:
-  variables:
-    R_VERSION: "oldrel"
-  extends: .update_packages
-
-build_patched:
-  variables:
-    R_VERSION: "patched"
-  extends: .build
-
-build_devel:
-  only:
-    refs:
-      - tags
-      - schedules
-  variables:
-    R_VERSION: "devel"
-  extends: .build
-
-build_oldrel:
-  only:
-    refs:
-      - tags
-      - schedules
-  variables:
-    R_VERSION: "oldrel"
-  extends: .build
+    NOT_CRAN: "false"
+  extends: .check
 
 check_as_cran_patched:
   variables: