fishTryRealBV_CC.xml 10.6 KB
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<list>
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	<species.DiadromousFishGroup>
		<name>species A</name>
		<color>
			<red>255</red>
			<green>0</green>
			<blue>0</blue>
			<alpha>255</alpha>
		</color>
		<linfVonBert>60.0</linfVonBert>
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		<dMaxDisp>300.0</dMaxDisp>
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		<lFirstMaturity>40.0</lFirstMaturity>
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		<nutrientRoutine>
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			<nutrientsOfInterest>
				<string>N</string>
				<string>P</string>
			</nutrientsOfInterest>
			<residenceTime>30.0</residenceTime>
			<excretionRate class="hashtable">
				<entry>
					<string>P</string>
					<double>2.17E-6</double>
				</entry>
				<entry>
					<string>N</string>
					<double>2.471E-5</double>
				</entry>
			</excretionRate>
			<fishFeaturesPreSpawning class="hashtable">
				<entry>
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					<species.DiadromousFish_-Gender>MALE</species.DiadromousFish_-Gender>
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					<hashtable>
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						<entry>
							<string>bLW_Gonad</string>
							<double>3.3838</double>
						</entry>
						<entry>
							<string>aLW_Gonad</string>
							<double>-8.8744</double>
						</entry>
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						<entry>
							<string>bLW</string>
							<double>2.1774</double>
						</entry>
						<entry>
							<string>aLW</string>
							<double>0.27144384321211973</double>
						</entry>
					</hashtable>
				</entry>
				<entry>
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					<species.DiadromousFish_-Gender>FEMALE</species.DiadromousFish_-Gender>
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					<hashtable>
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						<entry>
							<string>bLW_Gonad</string>
							<double>2.6729</double>
						</entry>
						<entry>
							<string>aLW_Gonad</string>
							<double>-5.2425</double>
						</entry>
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						<entry>
							<string>bLW</string>
							<double>3.147</double>
						</entry>
						<entry>
							<string>aLW</string>
							<double>0.007388725660209693</double>
						</entry>
					</hashtable>
				</entry>
			</fishFeaturesPreSpawning>
			<fishFeaturesPostSpawning class="hashtable">
				<entry>
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					<species.DiadromousFish_-Gender>MALE</species.DiadromousFish_-Gender>
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					<hashtable>
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						<entry>
							<string>bLW_Gonad</string>
							<double>3.8331</double>
						</entry>
						<entry>
							<string>aLW_Gonad</string>
							<double>-11.285</double>
						</entry>
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						<entry>
							<string>bLW</string>
							<double>2.9973</double>
						</entry>
						<entry>
							<string>aLW</string>
							<double>0.010383887012522573</double>
						</entry>
					</hashtable>
				</entry>
				<entry>
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					<species.DiadromousFish_-Gender>FEMALE</species.DiadromousFish_-Gender>
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					<hashtable>
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						<entry>
							<string>bLW_Gonad</string>
							<double>2.8545</double>
						</entry>
						<entry>
							<string>aLW_Gonad</string>
							<double>-6.6234</double>
						</entry>
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						<entry>
							<string>bLW</string>
							<double>2.9418</double>
						</entry>
						<entry>
							<string>aLW</string>
							<double>0.013199187556948952</double>
						</entry>
					</hashtable>
				</entry>
			</fishFeaturesPostSpawning>
			<juvenileFeatures class="hashtable">
				<entry>
					<string>bLW</string>
					<double>3.0306</double>
				</entry>
				<entry>
					<string>aLW</string>
					<double>0.006986429759979109</double>
				</entry>
			</juvenileFeatures>
			<compoCarcassPreSpawning class="hashtable">
				<entry>
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					<species.DiadromousFish_-Gender>MALE</species.DiadromousFish_-Gender>
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					<hashtable>
						<entry>
							<string>P</string>
							<double>0.00666</double>
						</entry>
						<entry>
							<string>N</string>
							<double>0.02941</double>
						</entry>
					</hashtable>
				</entry>
				<entry>
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					<species.DiadromousFish_-Gender>FEMALE</species.DiadromousFish_-Gender>
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					<hashtable>
						<entry>
							<string>P</string>
							<double>0.006730000000000001</double>
						</entry>
						<entry>
							<string>N</string>
							<double>0.029580000000000002</double>
						</entry>
					</hashtable>
				</entry>
			</compoCarcassPreSpawning>
			<compoCarcassPostSpawning class="hashtable">
				<entry>
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					<species.DiadromousFish_-Gender>MALE</species.DiadromousFish_-Gender>
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					<hashtable>
						<entry>
							<string>P</string>
							<double>0.00961</double>
						</entry>
						<entry>
							<string>N</string>
							<double>0.0279</double>
						</entry>
					</hashtable>
				</entry>
				<entry>
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					<species.DiadromousFish_-Gender>FEMALE</species.DiadromousFish_-Gender>
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					<hashtable>
						<entry>
							<string>P</string>
							<double>0.00997</double>
						</entry>
						<entry>
							<string>N</string>
							<double>0.03216</double>
						</entry>
					</hashtable>
				</entry>
			</compoCarcassPostSpawning>
			<compoGametes class="hashtable">
				<entry>
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					<species.DiadromousFish_-Gender>MALE</species.DiadromousFish_-Gender>
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					<hashtable>
						<entry>
							<string>P</string>
							<double>0.00724</double>
						</entry>
						<entry>
							<string>N</string>
							<double>0.0325</double>
						</entry>
					</hashtable>
				</entry>
				<entry>
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					<species.DiadromousFish_-Gender>FEMALE</species.DiadromousFish_-Gender>
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					<hashtable>
						<entry>
							<string>P</string>
							<double>0.0032</double>
						</entry>
						<entry>
							<string>N</string>
							<double>0.03242</double>
						</entry>
					</hashtable>
				</entry>
			</compoGametes>
			<compoJuvenile class="hashtable">
				<entry>
					<string>P</string>
					<double>0.00887</double>
				</entry>
				<entry>
					<string>N</string>
					<double>0.02803</double>
				</entry>
			</compoJuvenile>
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		</nutrientRoutine>
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		<fileNameInputForInitialObservation>data/input/reality/Obs1900.csv</fileNameInputForInitialObservation>
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		<centileForRange>0.95</centileForRange>
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		<parameterSetfileName>data/input/reality/parameterSet.csv</parameterSetfileName>
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		<parameterSetLine>0</parameterSetLine>
		<yearOfTheUpdate>0</yearOfTheUpdate>
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		<basinsToUpdateFile>data/input/reality/basinsToUpdate.csv</basinsToUpdateFile>
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		<outputPath>data/output/</outputPath>
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		<fileNameFluxes>nutrientFluxes</fileNameFluxes>
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		<processes>
			<processesAtBegin>
				<species.PopulateBasinNetworkWithANorthLimit>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<nbSIPerBasin>200</nbSIPerBasin>
					<initialLength>2.0</initialLength>
					<nbFishPerSI>2500</nbFishPerSI>
					<northLimitLatitude>43.54</northLimitLatitude>
				</species.PopulateBasinNetworkWithANorthLimit>
			</processesAtBegin>
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			<processesEachStep>
				<environment.InformTime>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
				</environment.InformTime>
				<species.PlopProcess>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<temporisation>0</temporisation>
				</species.PlopProcess>
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				<species.Age>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
				</species.Age>
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				<species.Grow>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<tempMinGrow>3.0</tempMinGrow>
					<tempMaxGrow>26.0</tempMaxGrow>
					<tempOptGrow>17.0</tempOptGrow>
					<kOpt>0.3900707</kOpt>
					<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
				</species.Grow>
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				<species.DisperseAndMigrateToRiverWithMultiNomDistriAndDeathBasin>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<alpha0Rep>-2.9</alpha0Rep>
					<alpha1Rep>19.7</alpha1Rep>
					<alpha3Rep>0.0</alpha3Rep>
					<meanBvSurface>17351</meanBvSurface>
					<standardDeviationBvSurface>35594</standardDeviationBvSurface>
					<meanInterDistance>300.0</meanInterDistance>
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					<standardDeviationInterDistance>978.0</standardDeviationInterDistance>
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					<pHomingForReachEquil>0.75</pHomingForReachEquil>
					<pHomingAfterEquil>0.75</pHomingAfterEquil>
					<NbYearForInstallPop>0</NbYearForInstallPop>
					<riverMigrationSeason>SPRING</riverMigrationSeason>
					<alpha2Rep>0.0</alpha2Rep>
					<meanSpawnersLengthAtRepro>45.0</meanSpawnersLengthAtRepro>
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					<standardDeviationOfSpawnersLengthAtRepro>2.0</standardDeviationOfSpawnersLengthAtRepro>
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					<weightOfDeathBasin>0.4</weightOfDeathBasin>
				</species.DisperseAndMigrateToRiverWithMultiNomDistriAndDeathBasin>
				<species.Survive>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<tempMinMortGenInRiv>10.0</tempMinMortGenInRiv>
					<tempMaxMortGenInRiv>23.0</tempMaxMortGenInRiv>
					<tempOptMortGenInRiv>20.0</tempOptMortGenInRiv>
					<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
					<mortalityRateInRiver>0.4</mortalityRateInRiver>
					<mortalityRateInSea>0.4</mortalityRateInSea>
					<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
				</species.Survive>
				<species.ReproduceAndSurviveAfterReproductionWithDiagnose>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<reproductionSeason>SPRING</reproductionSeason>
					<tempMinRep>9.846984</tempMinRep>
					<tempMaxRep>26.0</tempMaxRep>
					<tempOptRep>20.0</tempOptRep>
					<eta>2.4</eta>
					<ratioS95__S50>1.9</ratioS95__S50>
					<a>135000.0</a>
					<delta__t>0.33</delta__t>
					<survOptRep>0.0017</survOptRep>
					<lambda>4.1E-4</lambda>
					<initialLength>2.0</initialLength>
					<sigmaRecruitment>0.2</sigmaRecruitment>
					<survivalRateAfterReproduction>0.1</survivalRateAfterReproduction>
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					<maxNumberOfSuperIndividualPerReproduction>50.0
					</maxNumberOfSuperIndividualPerReproduction>
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					<withDiagnose>false</withDiagnose>
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					<displayFluxesOnConsole>false</displayFluxesOnConsole>
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				</species.ReproduceAndSurviveAfterReproductionWithDiagnose>
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				<species.MigrateToSea>
					<seaMigrationSeason>SUMMER</seaMigrationSeason>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
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					<displayFluxesOnConsole>false</displayFluxesOnConsole>
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				</species.MigrateToSea>
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				<environment.updateTemperatureInRealBasin>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<offshoreTemperature>12.0</offshoreTemperature>
				</environment.updateTemperatureInRealBasin>
			</processesEachStep>
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			<processesAtEnd>
				<species.IdentifyPopulation>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
					<consoleDisplay>false</consoleDisplay>
					<fluxesSeason>SPRING</fluxesSeason>
					<years>
						<long>2000</long>
						<long>2100</long>
					</years>
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					<fileNameOutput>fluxes</fileNameOutput>
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				</species.IdentifyPopulation>
				<species.TypeTrajectoryCV>
					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
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					<fileNameOutput>JeuParam100_2100RCP85_A_essai</fileNameOutput>
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				</species.TypeTrajectoryCV>
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			</processesAtEnd>
		</processes>
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		<useCemetery>true</useCemetery>
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	</species.DiadromousFishGroup>
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</list>