diff --git a/.gitignore b/.gitignore index 4e387c47ef25aaf223241f404e2dc55cf65d33cb..e89eb583c2b427fc0e033303043c1881c0d22bd1 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ +<<<<<<< HEAD output .settings .classpath @@ -5,3 +6,99 @@ output /bin/ /target/ +======= +.settings +.classpath +.project + +# gitignore for Java (https://github.com/github/gitignore/blob/master/Java.gitignore) +# Compiled class file +*.class + +# Log file +*.log + +# BlueJ files +*.ctxt + +# Mobile Tools for Java (J2ME) +.mtj.tmp/ + +# Package Files # +*.jar +*.war +*.ear +*.zip +*.tar.gz +*.rar + +# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml +hs_err_pid* + +# gitignore for eclispe (https://github.com/github/gitignore/blob/master/Global/Eclipse.gitignore) +.metadata +bin/ +tmp/ +*.tmp +*.bak +*.swp +*~.nib +local.properties +.settings/ +.loadpath +.recommenders + +# External tool builders +.externalToolBuilders/ + +# Locally stored "Eclipse launch configurations" +*.launch + +# PyDev specific (Python IDE for Eclipse) +*.pydevproject + +# CDT-specific (C/C++ Development Tooling) +.cproject + +# CDT- autotools +.autotools + +# Java annotation processor (APT) +.factorypath + +# PDT-specific (PHP Development Tools) +.buildpath + +# sbteclipse plugin +.target + +# Tern plugin +.tern-project + +# TeXlipse plugin +.texlipse + +# STS (Spring Tool Suite) +.springBeans + +# Code Recommenders +.recommenders/ + +# Scala IDE specific (Scala & Java development for Eclipse) +.cache-main +.scala_dependencies +.worksheet + +# personal +data/divers/ +data/input/.~* +data/output/ +bin +build +dist +target +.classpath +.project +org.* +/src/main/java/miscellaneous/Essai.java +>>>>>>> master diff --git a/data/input/fishTryRealBV.xml b/data/input/fishTryRealBV.xml index df219be0b39a13c1b9a78b952c35900c706d35ba..4d7ef568c8991bf85777bd7ec2f620c7176c167e 100644 --- a/data/input/fishTryRealBV.xml +++ b/data/input/fishTryRealBV.xml @@ -15,11 +15,11 @@ <processesAtBegin> <species.PopulateBasinNetwork> <synchronisationMode>ASYNCHRONOUS</synchronisationMode> - <nbSIPerBasin>2500</nbSIPerBasin> - <nbFishPerBasin>200</nbFishPerBasin> + <nbSIPerBasin>200</nbSIPerBasin> + <nbFishPerSI>2500</nbFishPerSI> <initialLength>2.0</initialLength> </species.PopulateBasinNetwork> - + <environment.fixTemperatureInRealBasin> <synchronisationMode>ASYNCHRONOUS</synchronisationMode> <selectedYear>1950</selectedYear> diff --git a/data/input/fishTryRealBV_CC.xml b/data/input/fishTryRealBV_CC.xml index 6c212e79d765bb1ac1d5336bffeb44f47cf839de..e5224a8d6ae123952b942bec9a2aee70fb036ff3 100644 --- a/data/input/fishTryRealBV_CC.xml +++ b/data/input/fishTryRealBV_CC.xml @@ -10,8 +10,7 @@ <linfVonBert>60.0</linfVonBert> <dMaxDisp>0.0</dMaxDisp> <lFirstMaturity>40.0</lFirstMaturity> - <fileNameInputForInitialObservation>data/input/reality/Obs1900.csv - </fileNameInputForInitialObservation> + <fileNameInputForInitialObservation>data/input/reality/Obs1900.csv</fileNameInputForInitialObservation> <processes> <processesAtBegin> diff --git a/src/main/java/species/DiadromousFishGroup.java b/src/main/java/species/DiadromousFishGroup.java index 9f338b6e9c128c3a32daae59a6b168398f3639a1..d503f9bbe25a276ed71b136bc9e72fead95f6f57 100644 --- a/src/main/java/species/DiadromousFishGroup.java +++ b/src/main/java/species/DiadromousFishGroup.java @@ -97,7 +97,7 @@ public class DiadromousFishGroup extends AquaNismsGroup< DiadromousFish, BasinNe InvocationTargetException { super.initTransientParameters(pilot); - if (basinsToUpdateFile != null){ + if ( basinsToUpdate != null){ String subDir=basinsToUpdateFile; if (basinsToUpdateFile.lastIndexOf("/")!=-1) subDir=basinsToUpdateFile.substring(basinsToUpdateFile.lastIndexOf("/")+1,