with a package dedicated to temperature effect

src/main/java/species/SurviveAfterReproduction.java

@@ -18,6 +18,8 @@ import fr.cemagref.simaqualife.kernel.util.TransientParameters.InitTransientPara
 import fr.cemagref.simaqualife.pilot.Pilot;
 import miscellaneous.BinomialForSuperIndividualGen;
 import species.DiadromousFish.SpawnerOrigin;
+import temperatureEffect.Rosso;
+import temperatureEffect.TemperatureEffect;
 import umontreal.iro.lecuyer.probdist.NormalDist;
 import umontreal.iro.lecuyer.randvar.NormalGen;
 
@@ -29,6 +31,8 @@ public class SurviveAfterReproduction extends AquaNismsGroupProcess<DiadromousFi
 
 	private double survivalRateAfterReproduction = 0.1;
 
+	private TemperatureEffect temperatureEffect;
+
 	private transient NormalGen genNormal;
 
 	/**
@@ -39,7 +43,9 @@ public class SurviveAfterReproduction extends AquaNismsGroupProcess<DiadromousFi
 	private transient BinomialForSuperIndividualGen aleaGen;
 
 	public static void main(String[] args) {
-		System.out.println((new XStream(new DomDriver())).toXML(new SurviveAfterReproduction()));
+		SurviveAfterReproduction surviveAfterReproduction = new SurviveAfterReproduction();
+		surviveAfterReproduction.temperatureEffect = new Rosso(0., 15., 22.);
+		System.out.println((new XStream(new DomDriver())).toXML(surviveAfterReproduction));
 	}
 
 

src/main/java/temperatureEffect/RectangularTemperatureEffect.java

+/**
+ * patrick
+ * @author Patrick Lambert
+ * @copyright Copyright (c) 2020, INRAE
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+ */
+package temperatureEffect;
+
+/**
+ *
+ */
+public class RectangularTemperatureEffect implements TemperatureEffect {
+	/**
+	 * 
+	 * @unit
+	 */
+	private static final long serialVersionUID = -611999636717694259L;
+
+	/**
+	 * minimal temperature . Below this value, the temperature effect is 0
+	 * 
+	 * @unit °C
+	 */
+	private double Tmin;
+
+	/**
+	 * maximal temperature. Above this value, the temperature effect is 0
+	 * 
+	 * @unit °C
+	 */
+	private double Tmax;
+
+	@Override
+	public double getTemperatureEffect(double temperature) {
+		if (temperature <= Tmin || temperature >= Tmax) {
+			return 0;
+		} else {
+			return 1;
+		}
+	}
+
+
+	public RectangularTemperatureEffect(double tmin, double tmax) {
+		super();
+		this.Tmin = tmin;
+		this.Tmax = tmax;
+	}
+
+}

src/main/java/temperatureEffect/Rosso.java

+/**
+ * patrick
+ * @author Patrick Lambert
+ * @copyright Copyright (c) 2020, INRAE
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+ */
+package temperatureEffect;
+
+/**
+ *
+ */
+public class Rosso implements TemperatureEffect {
+	/**
+	 * 
+	 * @unit
+	 */
+	private static final long serialVersionUID = -2646246167644233819L;
+
+	/**
+	 * minimal temperature . Below this value, the temperature effect is 0
+	 * 
+	 * @unit °C
+	 */
+	private double Tmin;
+
+	/**
+	 * optimal temperature. At this value, the temperature effect is 1
+	 * 
+	 * @unit °C
+	 */
+	private double Topt;
+
+	/**
+	 * maximal temperature. Above this value, the temperature effect is 0
+	 * 
+	 * @unit °C
+	 */
+	private double Tmax;
+
+	@Override
+	public double getTemperatureEffect(double temperature) {
+		if (temperature <= Tmin || temperature >= Tmax) {
+			return 0;
+		} else {
+			return (temperature - Tmin) * (temperature - Tmax)
+					/ ((temperature - Tmin) * (temperature - Tmax) - ((temperature - Topt) * (temperature - Topt)));
+		}
+	}
+
+
+	public Rosso(double tmin, double topt, double tmax) {
+		super();
+		this.Tmin = tmin;
+		this.Topt = topt;
+		this.Tmax = tmax;
+	}
+
+}

src/main/java/temperatureEffect/TemperatureEffect.java

+/**
+ * patrick
+ * @author Patrick Lambert
+ * @copyright Copyright (c) 2020, INRAE
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+ */
+package temperatureEffect;
+
+import java.io.Serializable;
+
+/**
+ *
+ */
+public interface TemperatureEffect extends Serializable {
+
+	public double getTemperatureEffect(double temperature);
+
+}

src/main/java/temperatureEffect/package-info.java

+/**
+ * patrick
+ * @author Patrick Lambert
+ * @copyright Copyright (c) 2020, INRAE
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+ */
+/**
+ *
+ */
+package temperatureEffect;
\ No newline at end of file