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Commit 19e655ea authored by Lambert Patrick's avatar Lambert Patrick
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xlm update 

need to be verify for calibration
parent 36292819
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data/input/fishTryRealBV_CC.xml
View file @ 19e655ea
......@@ -229,8 +229,8 @@
<outputPath>data/output/</outputPath>
<fileNameFluxes>nutrientFluxes</fileNameFluxes>
<lengthAtHatching>2.0</lengthAtHatching>
<linfVonBertForFemale>80.0</linfVonBertForFemale>
<linfVonBertForMale>80.0</linfVonBertForMale>
<linfVonBertForFemale>70.0</linfVonBertForFemale>
<linfVonBertForMale>70.0</linfVonBertForMale>
<lFirstMaturityForFemale>55.0</lFirstMaturityForFemale>
<lFirstMaturityForMale>40.0</lFirstMaturityForMale>
<processes>
......@@ -295,7 +295,7 @@
<tempMaxSurvivalSpawnerInRiv>23.0</tempMaxSurvivalSpawnerInRiv>
<!-- <tempOptSurvivalSpawnerInRiv>20.0</tempOptSurvivalSpawnerInRiv> -->
<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
<mortalityRateInRiver>0.4</mortalityRateInRiver>
<!-- <mortalityRateInRiver>0.4</mortalityRateInRiver> -->
<mortalityRateInSea>0.4</mortalityRateInSea>
<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
</species.Survive>
......
data/input/fishTryRealBV_calibration.xml
View file @ 19e655ea
......@@ -7,12 +7,9 @@
<blue>0</blue>
<alpha>255</alpha>
</color>
<dMaxDisp>300.0</dMaxDisp>
<linfVonBertForFemale>70.0</linfVonBertForFemale>
<linfVonBertForMale>70.0</linfVonBertForMale>
<lFirstMaturityForFemale>55.0</lFirstMaturityForFemale>
<lFirstMaturityForMale>40.0</lFirstMaturityForMale>
<lengthAtHatching>2</lengthAtHatching>
<nutrientRoutine>
<nutrientsOfInterest>
<string>N</string>
......@@ -43,11 +40,11 @@
</entry>
<entry>
<string>bLW</string>
<double>2.1774</double>
<double>3.2252</double>
</entry>
<entry>
<string>aLW</string>
<double>0.27144384321211973</double>
<double>0.004095817237891344</double>
</entry>
</hashtable>
</entry>
......@@ -64,11 +61,11 @@
</entry>
<entry>
<string>bLW</string>
<double>3.147</double>
<double>3.3429</double>
</entry>
<entry>
<string>aLW</string>
<double>0.007388725660209693</double>
<double>0.002665367811305362</double>
</entry>
</hashtable>
</entry>
......@@ -230,39 +227,46 @@
<yearOfTheUpdate>0</yearOfTheUpdate>
<basinsToUpdateFile>data/input/reality/basinsToUpdate.csv</basinsToUpdateFile>
<outputPath>data/output/</outputPath>
<fileNameFluxes>nutrientFluxes</fileNameFluxes>
<lengthAtHatching>2.0</lengthAtHatching>
<linfVonBertForFemale>80.0</linfVonBertForFemale>
<linfVonBertForMale>80.0</linfVonBertForMale>
<lFirstMaturityForFemale>55.0</lFirstMaturityForFemale>
<lFirstMaturityForMale>40.0</lFirstMaturityForMale>
<processes>
<processesAtBegin>
<species.PopulateBasinNetworkWithANorthLimit>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<nbSIPerBasin>200</nbSIPerBasin>
<initialLength>20.0</initialLength>
<nbFishPerSI>2500</nbFishPerSI>
<northLimitLatitude>43.54</northLimitLatitude>
</species.PopulateBasinNetworkWithANorthLimit>
</processesAtBegin>
<processesEachStep>
<environment.InformTime>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
</environment.InformTime>
<species.PlopProcess>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<temporisation>0</temporisation>
</species.PlopProcess>
<species.PopulateBasinNetworkSeveralTimes>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<nbSIPerBasin>200</nbSIPerBasin>
<nbFishPerSI>2500</nbFishPerSI>
<initialLength>20.0</initialLength>
<timesOfPopulate>5</timesOfPopulate>
<populateSeason>SPRING</populateSeason>
</species.PopulateBasinNetworkSeveralTimes>
<species.Age>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
</species.Age>
<!-- 3 -->
<species.Grow>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<tempMinGrow>3.0</tempMinGrow>
<tempMaxGrow>26.0</tempMaxGrow>
<tempOptGrow>17.0</tempOptGrow>
<kOptForFemale>0.5363472</kOptForFemale>
<kOptForMale>0.3900707</kOptForMale>
<kOptForFemale>0.2599284</kOptForFemale>
<kOptForMale>0.1883768</kOptForMale>
<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
</species.Grow>
......@@ -287,20 +291,19 @@
<species.Survive>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<tempMinMortGenInRiv>10.0</tempMinMortGenInRiv>
<tempMaxMortGenInRiv>23.0</tempMaxMortGenInRiv>
<tempOptMortGenInRiv>20.0</tempOptMortGenInRiv>
<tempMinSurvivalSpawnerInRiv>9.0</tempMinSurvivalSpawnerInRiv>
<tempMaxSurvivalSpawnerInRiv>23.0</tempMaxSurvivalSpawnerInRiv>
<!-- <tempOptSurvivalSpawnerInRiv>20.0</tempOptSurvivalSpawnerInRiv> -->
<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
<mortalityRateInRiver>0.4</mortalityRateInRiver>
<!-- <mortalityRateInRiver>0.4</mortalityRateInRiver> -->
<mortalityRateInSea>0.4</mortalityRateInSea>
<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
</species.Survive>
<!-- 6 -->
<species.ReproduceAndSurviveAfterReproductionWithDiagnose>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<reproductionSeason>SPRING</reproductionSeason>
<tempMinRep>9.846984</tempMinRep>
<tempMinRep>9.8</tempMinRep>
<tempMaxRep>26.0</tempMaxRep>
<tempOptRep>20.0</tempOptRep>
<eta>2.4</eta>
......@@ -316,11 +319,13 @@
<maxNumberOfSuperIndividualPerReproduction>50.0
</maxNumberOfSuperIndividualPerReproduction>
<withDiagnose>false</withDiagnose>
<displayFluxesOnConsole>false</displayFluxesOnConsole>
</species.ReproduceAndSurviveAfterReproductionWithDiagnose>
<species.MigrateToSea>
<seaMigrationSeason>SUMMER</seaMigrationSeason>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<displayFluxesOnConsole>false</displayFluxesOnConsole>
</species.MigrateToSea>
<environment.updateTemperatureInRealBasin>
......@@ -330,20 +335,6 @@
</processesEachStep>
<processesAtEnd>
<species.IdentifyPopulation>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<consoleDisplay>false</consoleDisplay>
<fluxesSeason>SPRING</fluxesSeason>
<years>
<long>2000</long>
<long>2100</long>
</years>
<fileNameOutput>fluxes</fileNameOutput>
</species.IdentifyPopulation>
<species.TypeTrajectoryCV>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<fileNameOutput>JeuParam100_2100RCP85_A_essai</fileNameOutput>
</species.TypeTrajectoryCV>
</processesAtEnd>
</processes>
......
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