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SimAquaLife
GR3D
Commits
28e2f6cd
Commit
28e2f6cd
authored
Apr 23, 2021
by
patrick.lambert
Browse files
with latitude in export
parent
61fbaa65
Changes
1
Hide whitespace changes
Inline
Side-by-side
src/main/java/analysis/AnalyseFishDistribution.java
View file @
28e2f6cd
...
...
@@ -254,40 +254,34 @@ public class AnalyseFishDistribution extends AquaNismsGroupProcess<DiadromousFis
// initialise the distribution range
double
southernEdge
=
northernLimit
;
double
northernEdge
=
southernLimit
;
int
southernId
=
-
1
;
int
northernId
=
-
1
;
String
southernName
=
""
;
String
northernName
=
""
;
// String southernName = "";
// String northernName = "";
RiverBasin
northernBasin
=
null
;
RiverBasin
southernBasin
=
null
;
// initialise for centroid
TreeMapForCentile
latitudeEffective
=
new
TreeMapForCentile
();
TreeMapForCentile
latitudePresence
=
new
TreeMapForCentile
();
String
[][]
export
=
new
String
[
2
][
6
];
for
(
RiverBasin
riverBasin
:
riverBasins
)
{
double
meanLastRecruitment
=
riverBasin
.
getLastRecruitments
().
getMean
();
if
(
meanLastRecruitment
>=
minimumRecruitsForPopulatedBasin
)
{
// the river basin is considered populated
//
NOTE
: recruiit number is calulated after thermal tolerance impact
//
CHECK
: recruiit number is calulated after thermal tolerance impact
// (which is intreaged in the stock-recruitment relationship)
// southern edge
if
(
riverBasin
.
getLatitude
()
<
southernEdge
)
{
// the basin is the new southern edge
southernEdge
=
riverBasin
.
getLatitude
();
southernId
=
riverBasin
.
getBasin_id
();
southernName
=
riverBasin
.
getName
();
southernBasin
=
riverBasin
;
}
// northern edge
if
(
riverBasin
.
getLatitude
()
>
northernEdge
)
{
// the basin is the new northern edge
northernEdge
=
riverBasin
.
getLatitude
();
northernId
=
riverBasin
.
getBasin_id
();
northernName
=
riverBasin
.
getName
();
northernBasin
=
riverBasin
;
}
// for distribution centroide computation
...
...
@@ -297,29 +291,41 @@ public class AnalyseFishDistribution extends AquaNismsGroupProcess<DiadromousFis
}
}
// if the universe is empty (none of basins is populated)
if
(
southernEdge
==
northernLimit
&
northernEdge
==
southernLimit
)
{
southernEdge
=
(
northernLimit
+
southernLimit
)
/
2
.;
northernEdge
=
southernEdge
;
}
// distribution centroids computation
double
basinCentroid
=
latitudePresence
.
calculateMedian
();
double
effectiveCentroid
=
latitudeEffective
.
calculateMedian
();
// export
String
[][]
export
=
new
String
[
2
][
7
];
export
[
0
][
0
]
=
"southern_basin_id"
;
export
[
0
][
1
]
=
"southern_basin_name"
;
export
[
0
][
2
]
=
"northern_basin_id"
;
export
[
0
][
3
]
=
"northern_basin_name"
;
export
[
0
][
4
]
=
"basin_centroid_latitude"
;
export
[
0
][
5
]
=
"effective_centroid_latitude"
;
export
[
1
][
0
]
=
String
.
valueOf
(
southernId
);
export
[
1
][
1
]
=
southernName
;
export
[
1
][
2
]
=
String
.
valueOf
(
northernId
);
export
[
1
][
3
]
=
northernName
;
export
[
1
][
4
]
=
String
.
valueOf
(
basinCentroid
);
export
[
1
][
5
]
=
String
.
valueOf
(
effectiveCentroid
);
export
[
0
][
2
]
=
"southern_latitude"
;
export
[
0
][
3
]
=
"northern_basin_id"
;
export
[
0
][
4
]
=
"northern_basin_name"
;
export
[
0
][
5
]
=
"northern_latitude"
;
export
[
0
][
6
]
=
"basin_centroid_latitude"
;
export
[
0
][
7
]
=
"effective_centroid_latitude"
;
if
(
southernBasin
!=
null
&
northernBasin
!=
null
)
{
export
[
1
][
0
]
=
String
.
valueOf
(
southernBasin
.
getBasin_id
());
export
[
1
][
1
]
=
southernBasin
.
getName
();
export
[
1
][
2
]
=
String
.
valueOf
(
southernBasin
.
getLatitude
());
export
[
1
][
3
]
=
String
.
valueOf
(
northernBasin
.
getBasin_id
());
export
[
1
][
4
]
=
northernBasin
.
getName
();
export
[
1
][
5
]
=
String
.
valueOf
(
northernBasin
.
getLatitude
());
export
[
1
][
6
]
=
String
.
valueOf
(
basinCentroid
);
export
[
1
][
7
]
=
String
.
valueOf
(
effectiveCentroid
);
}
else
{
export
[
1
][
0
]
=
"NA"
;
export
[
1
][
1
]
=
"NA"
;
export
[
1
][
2
]
=
"NA"
;
export
[
1
][
3
]
=
"NA"
;
export
[
1
][
4
]
=
"NA"
;
export
[
1
][
5
]
=
"NA"
;
export
[
1
][
6
]
=
"NA"
;
export
[
1
][
7
]
=
"NA"
;
}
return
export
;
}
...
...
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