Merge branch 'develop' of gitlab-ssh.irstea.fr:SimAquaLife/GR3D into exploration_GR3D_process

data/input/BNtry.xml

-
-<environment.BasinNetworkWithnBasins>
-  <basinNetworkFileName>data/input/BasinNetwork.csv</basinNetworkFileName>
-  <distanceGridFileName>data/input/distanceGrid.csv</distanceGridFileName>
-    <nbBasin>25</nbBasin>
-</environment.BasinNetworkWithnBasins> 
\ No newline at end of file

data/input/BNtry2Basins.xml

-<environment.BasinNetworkWith2Basins>
-  <nbBasin>0</nbBasin>
-  <memorySize>10</memorySize>
-  <cVthresholdForFinalStates>5.0</cVthresholdForFinalStates>
-  <nameOfBv>
-    <string>BV1</string>
-    <string>BV2</string>
-  </nameOfBv>
-  <surfaceOfBv1>40000.0</surfaceOfBv1>
-  <surfaceOfBv2>20000.0</surfaceOfBv2>
-  <interDistance>100.0</interDistance>
-  <winterTemperatureOfBv1>8.7</winterTemperatureOfBv1>
-  <springTemperatureOfBv1>20.1</springTemperatureOfBv1>
-  <summerTemperatureOfBv1>23.1</summerTemperatureOfBv1>
-  <fallTemperatureOfBv1>13.0</fallTemperatureOfBv1>
-  <winterTemperatureOfBv2>8.7</winterTemperatureOfBv2>
-  <springTemperatureOfBv2>14.0</springTemperatureOfBv2>
-  <summerTemperatureOfBv2>23.1</summerTemperatureOfBv2>
-  <fallTemperatureOfBv2>13.0</fallTemperatureOfBv2>
-</environment.BasinNetworkWith2Basins>

data/input/BNtrySameSurf.xml

-<environment.GridBasinNetwork>
-  <basinNetworkFileName>data/input/BasinNetworkSameSurf.csv</basinNetworkFileName>
-  <distanceGridFileName>data/input/distanceGrid.csv</distanceGridFileName>
-    <nbBasin>25</nbBasin>
-</environment.GridBasinNetwork> 
\ No newline at end of file

data/input/BasinNetworkSameSurf.csv

-name;longitude;latitude;surface;pDam;firstDamHeight;winterTemperature;springTemperature;summerTemperature;fallTemperature;x1R;y1R;x2R;y2R;x3R;y3R;x4R;y4R;x1S;y1S;x2S;y2S;x3S;y3S;x4S;y4S;x1O;y1O;x2O;y2O;x3O;y3O;x4O;y4O
-BV1;-1;59;80351;0.8171471;21;5.966666667;8.466666667;13.76666667;2.333333333;-1;59.5;-1;58.5;-0.774672226;58.5;-0.774672226;59.5;-1.25;59.5;-1.25;58.5;-2.25;58.5;-2.25;59.5;-2.75;59.5;-2.75;58.5;-3.75;58.5;-3.75;59.5
-BV2;-1;58;80351;0.824171631;16;6.366666667;8.866666667;14.16666667;2.733333333;-1;58.5;-1;57.5;4.273763456;57.5;4.273763456;58.5;-1.25;58.5;-1.25;57.5;-2.25;57.5;-2.25;58.5;-2.75;58.5;-2.75;57.5;-3.75;57.5;-3.75;58.5
-BV3;-1;57;80351;0.837377552;27;6.766666667;9.266666667;14.56666667;3.133333333;-1;57.5;-1;56.5;-0.908146595;56.5;-0.908146595;57.5;-1.25;57.5;-1.25;56.5;-2.25;56.5;-2.25;57.5;-2.75;57.5;-2.75;56.5;-3.75;56.5;-3.75;57.5
-BV4;-1;56;80351;0.86783708;30;7.166666667;9.666666667;14.96666667;3.533333333;-1;56.5;-1;55.5;-0.939998464;55.5;-0.939998464;56.5;-1.25;56.5;-1.25;55.5;-2.25;55.5;-2.25;56.5;-2.75;56.5;-2.75;55.5;-3.75;55.5;-3.75;56.5
-BV5;-1;55;80351;1;NaN;7.566666667;10.06666667;15.36666667;3.933333333;-1;55.5;-1;54.5;-0.881370071;54.5;-0.881370071;55.5;-1.25;55.5;-1.25;54.5;-2.25;54.5;-2.25;55.5;-2.75;55.5;-2.75;54.5;-3.75;54.5;-3.75;55.5
-BV6;-1;54;80351;1;NaN;7.966666667;10.46666667;15.76666667;4.333333333;-1;54.5;-1;53.5;-0.937102977;53.5;-0.937102977;54.5;-1.25;54.5;-1.25;53.5;-2.25;53.5;-2.25;54.5;-2.75;54.5;-2.75;53.5;-3.75;53.5;-3.75;54.5
-BV7;-1;53;80351;0.828040341;17;8.366666667;10.86666667;16.16666667;4.733333333;-1;53.5;-1;52.5;-0.717977375;52.5;-0.717977375;53.5;-1.25;53.5;-1.25;52.5;-2.25;52.5;-2.25;53.5;-2.75;53.5;-2.75;52.5;-3.75;52.5;-3.75;53.5
-BV8;-1;52;80351;0.812909072;25;8.766666667;11.26666667;16.56666667;5.133333333;-1;52.5;-1;51.5;-0.87930576;51.5;-0.87930576;52.5;-1.25;52.5;-1.25;51.5;-2.25;51.5;-2.25;52.5;-2.75;52.5;-2.75;51.5;-3.75;51.5;-3.75;52.5
-BV9;-1;51;80351;0.831098911;27;9.166666667;11.66666667;16.96666667;5.533333333;-1;51.5;-1;50.5;-0.280361285;50.5;-0.280361285;51.5;-1.25;51.5;-1.25;50.5;-2.25;50.5;-2.25;51.5;-2.75;51.5;-2.75;50.5;-3.75;50.5;-3.75;51.5
-BV10;-1;50;80351;0.7907389;30;9.433333333;12.06666667;17.5;6.4;-1;50.5;-1;49.5;-0.967198581;49.5;-0.967198581;50.5;-1.25;50.5;-1.25;49.5;-2.25;49.5;-2.25;50.5;-2.75;50.5;-2.75;49.5;-3.75;49.5;-3.75;50.5
-BV11;-1;49;80351;0.873917631;25;8.566666667;12.5;17.86666667;6.1;-1;49.5;-1;48.5;-0.948558005;48.5;-0.948558005;49.5;-1.25;49.5;-1.25;48.5;-2.25;48.5;-2.25;49.5;-2.75;49.5;-2.75;48.5;-3.75;48.5;-3.75;49.5
-BV12;-1;48;80351;1;NaN;8.833333333;13.56666667;18.83333333;6.866666667;-1;48.5;-1;47.5;-0.874481653;47.5;-0.874481653;48.5;-1.25;48.5;-1.25;47.5;-2.25;47.5;-2.25;48.5;-2.75;48.5;-2.75;47.5;-3.75;47.5;-3.75;48.5
-BV13;-1;47;80351;0.724917971;27;9.7;14.3;19.66666667;7.766666667;-1;47.5;-1;46.5;1.672937228;46.5;1.672937228;47.5;-1.25;47.5;-1.25;46.5;-2.25;46.5;-2.25;47.5;-2.75;47.5;-2.75;46.5;-3.75;46.5;-3.75;47.5
-BV14;-1;46;80351;0.741675841;18;10.3;14.93333333;20.43333333;8.466666667;-1;46.5;-1;45.5;-0.91926889;45.5;-0.91926889;46.5;-1.25;46.5;-1.25;45.5;-2.25;45.5;-2.25;46.5;-2.75;46.5;-2.75;45.5;-3.75;45.5;-3.75;46.5
-BV15;-1;45;80351;0.849634287;18;10.8;15.3;20.93333333;9.066666667;-1;45.5;-1;44.5;0.045422258;44.5;0.045422258;45.5;-1.25;45.5;-1.25;44.5;-2.25;44.5;-2.25;45.5;-2.75;45.5;-2.75;44.5;-3.75;44.5;-3.75;45.5
-BV16;-1;44;80351;0.748606274;20;9.866666667;13.9;21.3;7.166666667;-1;44.5;-1;43.5;-0.779719161;43.5;-0.779719161;44.5;-1.25;44.5;-1.25;43.5;-2.25;43.5;-2.25;44.5;-2.75;44.5;-2.75;43.5;-3.75;43.5;-3.75;44.5
-BV17;-1;43;80351;0.843280351;22;8.733333333;13.86666667;22.33333333;5.833333333;-1;43.5;-1;42.5;-0.882163621;42.5;-0.882163621;43.5;-1.25;43.5;-1.25;42.5;-2.25;42.5;-2.25;43.5;-2.75;43.5;-2.75;42.5;-3.75;42.5;-3.75;43.5
-BV18;-1;42;80351;1;NaN;12.3;16.8;22.43333333;10.56666667;-1;42.5;-1;41.5;-0.941363354;41.5;-0.941363354;42.5;-1.25;42.5;-1.25;41.5;-2.25;41.5;-2.25;42.5;-2.75;42.5;-2.75;41.5;-3.75;41.5;-3.75;42.5
-BV19;-1;41;80351;0.901652746;16;12.8;17.3;22.93333333;11.06666667;-1;41.5;-1;40.5;-0.99521361;40.5;-0.99521361;41.5;-1.25;41.5;-1.25;40.5;-2.25;40.5;-2.25;41.5;-2.75;41.5;-2.75;40.5;-3.75;40.5;-3.75;41.5
-BV20;-1;40;80351;0.910050033;25;13.3;17.8;23.43333333;11.56666667;-1;40.5;-1;39.5;-0.67398325;39.5;-0.67398325;40.5;-1.25;40.5;-1.25;39.5;-2.25;39.5;-2.25;40.5;-2.75;40.5;-2.75;39.5;-3.75;39.5;-3.75;40.5
-BV21;-1;39;80351;1;NaN;13.8;18.3;23.93333333;12.06666667;-1;39.5;-1;38.5;-0.464024283;38.5;-0.464024283;39.5;-1.25;39.5;-1.25;38.5;-2.25;38.5;-2.25;39.5;-2.75;39.5;-2.75;38.5;-3.75;38.5;-3.75;39.5
-BV22;-1;38;80351;1;NaN;14.3;18.8;24.43333333;12.56666667;-1;38.5;-1;37.5;-0.880298767;37.5;-0.880298767;38.5;-1.25;38.5;-1.25;37.5;-2.25;37.5;-2.25;38.5;-2.75;38.5;-2.75;37.5;-3.75;37.5;-3.75;38.5
-BV23;-1;37;80351;0.77438752;25;14.8;19.3;24.93333333;13.06666667;-1;37.5;-1;36.5;-0.504060609;36.5;-0.504060609;37.5;-1.25;37.5;-1.25;36.5;-2.25;36.5;-2.25;37.5;-2.75;37.5;-2.75;36.5;-3.75;36.5;-3.75;37.5
-BV24;-1;36;80351;0.801607516;23;15.3;19.8;25.43333333;13.56666667;-1;36.5;-1;35.5;-0.340177735;35.5;-0.340177735;36.5;-1.25;36.5;-1.25;35.5;-2.25;35.5;-2.25;36.5;-2.75;36.5;-2.75;35.5;-3.75;35.5;-3.75;36.5
-BV25;-1;35;80351;0.860728979;18;15.8;20.3;25.93333333;14.06666667;-1;35.5;-1;34.5;-0.939010139;34.5;-0.939010139;35.5;-1.25;35.5;-1.25;34.5;-2.25;34.5;-2.25;35.5;-2.75;35.5;-2.75;34.5;-3.75;34.5;-3.75;35.5

data/input/fishTry2BV.xml

-<list>
-	<species.DiadromousFishGroup>
-		<name>species A</name>
-		<color>
-			<red>255</red>
-			<green>0</green>
-			<blue>0</blue>
-			<alpha>255</alpha>
-		</color>
-		<linfVonBert>60.0</linfVonBert>
-		<dMaxDisp>0.0</dMaxDisp>
-		<lFirstMaturity>40.0</lFirstMaturity>
-
-		<processes>
-			<processesAtBegin>
-				<species.PopulateWithASinglePopulation>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbSIPerBasin>2500</nbSIPerBasin>
-					<nbIndPerSI>200</nbIndPerSI>
-					<bassinInd>0</bassinInd>
-					<initialLength>2.0</initialLength>
-				</species.PopulateWithASinglePopulation>
-			</processesAtBegin>
-
-			<processesEachStep>
-				<species.PlopProcess>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<temporisation>0</temporisation>
-				</species.PlopProcess>
-
-				<species.Age>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.Age>
-
-				<species.Grow>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinGrow>3</tempMinGrow>
-					<tempMaxGrow>26</tempMaxGrow>
-					<tempOptGrow>17</tempOptGrow>
-					<kOpt>0.3</kOpt>
-					<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
-				</species.Grow>
-
-				<species.DisperseAndMigrateToRiverWithMultiNomDistriAndDeathBasin>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<alpha0Rep>-2.9</alpha0Rep>
-					<alpha1Rep>19.7</alpha1Rep>
-					<alpha3Rep>0.0</alpha3Rep>
-					<meanBvSurface>23071.0</meanBvSurface>
-					<standardDeviationBvSurface>39833.0</standardDeviationBvSurface>
-					<meanInterDistance>300.0</meanInterDistance>
-					<standardDeviationInterDistance>978.0
-					</standardDeviationInterDistance>
-					<pHomingForReachEquil>1</pHomingForReachEquil>
-					<pHomingAfterEquil>0.8</pHomingAfterEquil>
-					<NbYearForInstallPop>50</NbYearForInstallPop>
-					<riverMigrationSeason>SPRING</riverMigrationSeason>
-					<alpha2Rep>0.0</alpha2Rep>
-					<meanSpawnersLengthAtRepro>45.0</meanSpawnersLengthAtRepro>
-					<standardDeviationOfSpawnersLengthAtRepro>2.0
-					</standardDeviationOfSpawnersLengthAtRepro>
-					<weightOfDeathBasin>0.4</weightOfDeathBasin>
-				</species.DisperseAndMigrateToRiverWithMultiNomDistriAndDeathBasin>
-
-				<species.Survive>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinMortGenInRiv>10.0</tempMinMortGenInRiv>
-					<tempMaxMortGenInRiv>23.0</tempMaxMortGenInRiv>
-					<tempOptMortGenInRiv>20.0</tempOptMortGenInRiv>
-					<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
-					<mortalityRateInRiver>0.4</mortalityRateInRiver>
-					<mortalityRateInSea>0.4</mortalityRateInSea>
-					<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
-				</species.Survive>
-
-				<species.ReproduceAndSurviveAfterReproduction>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<reproductionSeason>SPRING</reproductionSeason>
-					<tempMinRep>14.0</tempMinRep>
-					<tempMaxRep>26.0</tempMaxRep>
-					<tempOptRep>20.0</tempOptRep>
-					<eta>2.4</eta>
-					<ratioS95__S50>1.9</ratioS95__S50>
-					<a>135000.0</a>
-					<delta__t>0.33</delta__t>
-					<survOptRep>0.0017</survOptRep>
-					<lambda>4.1E-4</lambda>
-					<initialLength>2.0</initialLength>
-					<sigmaRecruitment>0.2</sigmaRecruitment>
-					<survivalRateAfterReproduction>0.1</survivalRateAfterReproduction>
-					<maxNumberOfSuperIndividualPerReproduction>50.0
-					</maxNumberOfSuperIndividualPerReproduction>
-				</species.ReproduceAndSurviveAfterReproduction>
-
-				<species.MigrateToSea>
-					<seaMigrationSeason>SUMMER</seaMigrationSeason>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.MigrateToSea>
-
-				<environment.UpdateTemperature>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbYearBeforeWarming>50</nbYearBeforeWarming>
-					<nbYearForStopWarming>150</nbYearForStopWarming>
-					<tempValueOfCenturyWarmingWinter>3.0
-					</tempValueOfCenturyWarmingWinter>
-					<tempValueOfCenturyWarmingSpring>3.0
-					</tempValueOfCenturyWarmingSpring>
-					<tempValueOfCenturyWarmingSummer>3.0
-					</tempValueOfCenturyWarmingSummer>
-					<tempValueOfCenturyWarmingAutomn>3.0
-					</tempValueOfCenturyWarmingAutomn>
-					<incrementDuration>100.0</incrementDuration>
-					<incrementPower>1.0</incrementPower>
-				</environment.UpdateTemperature>
-			</processesEachStep>
-
-			<processesAtEnd>
-				<species.TypeTrajectoryCV>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.TypeTrajectoryCV>
-
-			</processesAtEnd>
-		</processes>
-		<useCemetery>false</useCemetery>
-	</species.DiadromousFishGroup>
-</list>
\ No newline at end of file

data/input/fishTryAllBasin.xml

-<list>
-	<species.DiadromousFishGroup>
-		<name>species A</name>
-		<color>
-			<red>255</red>
-			<green>0</green>
-			<blue>0</blue>
-			<alpha>255</alpha>
-		</color>
-		<linfVonBert>60.0</linfVonBert>
-		<dMaxDisp>0.0</dMaxDisp>
-		<lFirstMaturity>40.0</lFirstMaturity>
-
-		<processes>
-			<processesAtBegin>
-				<species.PopulateBasinNetwork>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbSIPerBasin>50</nbSIPerBasin>
-					<nbFishPerBasin>10</nbFishPerBasin>
-					<initialLength>2.0</initialLength>
-				</species.PopulateBasinNetwork>
-			</processesAtBegin>
-
-			<processesEachStep>
-				<species.PlopProcess>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<temporisation>0</temporisation>
-				</species.PlopProcess>
-
-				<species.Age>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.Age>
-
-				<species.Survive>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinMortGenInRiv>10.0</tempMinMortGenInRiv>
-					<tempMaxMortGenInRiv>23.0</tempMaxMortGenInRiv>
-					<tempOptMortGenInRiv>20.0</tempOptMortGenInRiv>
-					<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
-					<mortalityRateInRiver>0.4</mortalityRateInRiver>
-					<mortalityRateInSea>0.4</mortalityRateInSea>
-					<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
-				</species.Survive>
-
-				<species.Grow>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinGrow>3.0</tempMinGrow>
-					<tempMaxGrow>26.0</tempMaxGrow>
-					<tempOptGrow>17.0</tempOptGrow>
-					<kOpt>0.3</kOpt>
-					<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
-				</species.Grow>
-
-				<species.DisperseAndMigrateToRiver>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<pHoming>0.7</pHoming>
-					<riverMigrationSeason>WINTER</riverMigrationSeason>
-					<alpha0Rep>0.0</alpha0Rep>
-					<alpha1Rep>0.015</alpha1Rep>
-					<alpha2Rep>0.0</alpha2Rep>
-					<alpha3Rep>0.0</alpha3Rep>
-					<meanBvSurface>40000.0</meanBvSurface>
-					<standardDeviationBvSurface>2.0</standardDeviationBvSurface>
-					<meanInterDistance>100.0</meanInterDistance>
-					<standardDeviationInterDistance>50.0</standardDeviationInterDistance>
-				</species.DisperseAndMigrateToRiver>
-
-				<species.ReproduceAndSurviveAfterReproduction>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<reproductionSeason>SPRING</reproductionSeason>
-					<tempMinRep>14.0</tempMinRep>
-					<tempMaxRep>26.0</tempMaxRep>
-					<tempOptRep>20.0</tempOptRep>
-					<eta>2.4</eta>
-					<ratioS95__S50>2.0</ratioS95__S50>
-					<a>135000.0</a>
-					<delta__t>0.33</delta__t>
-					<survOpt>0.0017</survOpt>
-					<lambda>4.1E-4</lambda>
-					<initialLength>2.0</initialLength>
-					<survivalRateAfterReproduction>0.1</survivalRateAfterReproduction>
-					<maxNumberOfSuperIndividualPerReproduction>50.0
-					</maxNumberOfSuperIndividualPerReproduction>
-				</species.ReproduceAndSurviveAfterReproduction>
-
-				<species.MigrateToSea>
-					<seaMigrationSeason>SUMMER</seaMigrationSeason>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.MigrateToSea>
-
-				<environment.UpdateTemperature>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbYearBeforeWarming>200</nbYearBeforeWarming>
-					<tempValueOfCenturyWarmingWinter>3.0
-					</tempValueOfCenturyWarmingWinter>
-					<tempValueOfCenturyWarmingSpring>3.0
-					</tempValueOfCenturyWarmingSpring>
-					<tempValueOfCenturyWarmingSummer>3.0
-					</tempValueOfCenturyWarmingSummer>
-					<tempValueOfCenturyWarmingAutomn>3.0
-					</tempValueOfCenturyWarmingAutomn>
-					<incrementDuration>0.0</incrementDuration>
-					<incrementPower>1.0</incrementPower>
-				</environment.UpdateTemperature>
-			</processesEachStep>
-
-			<processesAtEnd>
-			</processesAtEnd>
-		</processes>
-		<useCemetery>false</useCemetery>
-	</species.DiadromousFishGroup>
-</list>
-	
\ No newline at end of file

data/input/fishTryOneBasin.xml

-<list>
-	<species.DiadromousFishGroup>
-		<name>species A</name>
-		<color>
-			<red>255</red>
-			<green>0</green>
-			<blue>0</blue>
-			<alpha>255</alpha>
-		</color>
-		<linfVonBert>60.0</linfVonBert>
-		<dMaxDisp>0.0</dMaxDisp>
-		<lFirstMaturity>40.0</lFirstMaturity>
-
-		<processes>
-			<processesAtBegin>
-				<species.PopulateWithASinglePopulation>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbSIPerBasin>50</nbSIPerBasin>
-					<nbIndPerSI>10</nbIndPerSI>
-					<bassinInd>20</bassinInd>
-					<initialLength>2.0</initialLength>
-				</species.PopulateWithASinglePopulation>
-			</processesAtBegin>
-
-			<processesEachStep>
-				<species.PlopProcess>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<temporisation>0</temporisation>
-				</species.PlopProcess>
-
-				<species.Age>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.Age>
-
-				<species.Survive>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinMortGenInRiv>10.0</tempMinMortGenInRiv>
-					<tempMaxMortGenInRiv>23.0</tempMaxMortGenInRiv>
-					<tempOptMortGenInRiv>20.0</tempOptMortGenInRiv>
-					<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
-					<mortalityRateInRiver>0.4</mortalityRateInRiver>
-					<mortalityRateInSea>0.4</mortalityRateInSea>
-					<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
-				</species.Survive>
-
-				<species.Grow>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinGrow>3.0</tempMinGrow>
-					<tempMaxGrow>26.0</tempMaxGrow>
-					<tempOptGrow>17.0</tempOptGrow>
-					<kOpt>0.3</kOpt>
-					<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
-				</species.Grow>
-
-				<species.DisperseAndMigrateToRiver>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<pHoming>0.7</pHoming>
-					<riverMigrationSeason>WINTER</riverMigrationSeason>
-					<alpha0Rep>0.0</alpha0Rep>
-					<alpha1Rep>0.015</alpha1Rep>
-					<alpha2Rep>0.0</alpha2Rep>
-					<alpha3Rep>0.0</alpha3Rep>
-					<meanBvSurface>40000.0</meanBvSurface>
-					<standardDeviationBvSurface>2.0</standardDeviationBvSurface>
-					<meanInterDistance>100.0</meanInterDistance>
-					<standardDeviationInterDistance>50.0</standardDeviationInterDistance>
-				</species.DisperseAndMigrateToRiver>
-
-				<species.ReproduceAndSurviveAfterReproduction>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<reproductionSeason>SPRING</reproductionSeason>
-					<tempMinRep>14.0</tempMinRep>
-					<tempMaxRep>26.0</tempMaxRep>
-					<tempOptRep>20.0</tempOptRep>
-					<eta>2.4</eta>
-					<ratioS95__S50>2.0</ratioS95__S50>
-					<a>135000.0</a>
-					<delta__t>0.33</delta__t>
-					<survOpt>0.0017</survOpt>
-					<lambda>4.1E-4</lambda>
-					<initialLength>2.0</initialLength>
-					<survivalRateAfterReproduction>0.1</survivalRateAfterReproduction>
-					<maxNumberOfSuperIndividualPerReproduction>50.0
-					</maxNumberOfSuperIndividualPerReproduction>
-				</species.ReproduceAndSurviveAfterReproduction>
-
-				<species.MigrateToSea>
-					<seaMigrationSeason>SUMMER</seaMigrationSeason>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.MigrateToSea>
-
-				<environment.UpdateTemperature>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbYearBeforeWarming>100</nbYearBeforeWarming>
-					<tempValueOfCenturyWarmingWinter>3.0
-					</tempValueOfCenturyWarmingWinter>
-					<tempValueOfCenturyWarmingSpring>3.0
-					</tempValueOfCenturyWarmingSpring>
-					<tempValueOfCenturyWarmingSummer>3.0
-					</tempValueOfCenturyWarmingSummer>
-					<tempValueOfCenturyWarmingAutomn>3.0
-					</tempValueOfCenturyWarmingAutomn>
-					<incrementDuration>100.0</incrementDuration>
-					<incrementPower>1.0</incrementPower>
-				</environment.UpdateTemperature>
-			</processesEachStep>
-
-			<processesAtEnd>
-			</processesAtEnd>
-		</processes>
-		<useCemetery>false</useCemetery>
-	</species.DiadromousFishGroup>
-</list>
\ No newline at end of file

data/input/fishTryOneBasinAmong2.xml

-<list>
-	<species.DiadromousFishGroup>
-		<name>species A</name>
-		<color>
-			<red>255</red>
-			<green>0</green>
-			<blue>0</blue>
-			<alpha>255</alpha>
-		</color>
-		<linfVonBert>60.0</linfVonBert>
-		<dMaxDisp>0.0</dMaxDisp>
-		<lFirstMaturity>40.0</lFirstMaturity>
-
-		<processes>
-			<processesAtBegin>
-				<species.PopulateWithASinglePopulation>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbSIPerBasin>50</nbSIPerBasin>
-					<nbIndPerSI>10</nbIndPerSI>
-					<bassinInd>0</bassinInd>
-					<initialLength>2.0</initialLength>
-				</species.PopulateWithASinglePopulation>
-			</processesAtBegin>
-
-			<processesEachStep>
-				<species.PlopProcess>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<temporisation>0</temporisation>
-				</species.PlopProcess>
-
-				<species.Age>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.Age>
-
-				<species.Survive>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinMortGenInRiv>10.0</tempMinMortGenInRiv>
-					<tempMaxMortGenInRiv>23.0</tempMaxMortGenInRiv>
-					<tempOptMortGenInRiv>20.0</tempOptMortGenInRiv>
-					<survivalProbOptGenInRiv>1.0</survivalProbOptGenInRiv>
-					<mortalityRateInRiver>0.4</mortalityRateInRiver>
-					<mortalityRateInSea>0.4</mortalityRateInSea>
-					<mortalityRateInOffshore>0.4</mortalityRateInOffshore>
-				</species.Survive>
-
-				<species.Grow>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<tempMinGrow>3.0</tempMinGrow>
-					<tempMaxGrow>26.0</tempMaxGrow>
-					<tempOptGrow>17.0</tempOptGrow>
-					<kOpt>0.3</kOpt>
-					<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
-				</species.Grow>
-
-				<species.DisperseAndMigrateToRiver>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<pHoming>0.7</pHoming>
-					<riverMigrationSeason>WINTER</riverMigrationSeason>
-					<alpha0Rep>0.0</alpha0Rep>
-					<alpha1Rep>0.015</alpha1Rep>
-					<alpha2Rep>0.0</alpha2Rep>
-					<alpha3Rep>0.0</alpha3Rep>
-				</species.DisperseAndMigrateToRiver>
-
-				<species.ReproduceAndSurviveAfterReproduction>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<reproductionSeason>SPRING</reproductionSeason>
-					<tempMinRep>14.0</tempMinRep>
-					<tempMaxRep>26.0</tempMaxRep>
-					<tempOptRep>20.0</tempOptRep>
-					<eta>2.4</eta>
-					<ratioS95__S50>2.0</ratioS95__S50>
-					<a>135000.0</a>
-					<delta__t>0.33</delta__t>
-					<survOpt>0.0017</survOpt>
-					<lambda>4.1E-4</lambda>
-					<initialLength>2.0</initialLength>
-					<survivalRateAfterReproduction>0.1</survivalRateAfterReproduction>
-					<maxNumberOfSuperIndividualPerReproduction>50.0
-					</maxNumberOfSuperIndividualPerReproduction>
-				</species.ReproduceAndSurviveAfterReproduction>
-
-				<species.MigrateToSea>
-					<seaMigrationSeason>SUMMER</seaMigrationSeason>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-				</species.MigrateToSea>
-
-				<environment.UpdateTemperature>
-					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
-					<nbYearBeforeWarming>100</nbYearBeforeWarming>
-					<tempValueOfCenturyWarmingWinter>3.0
-					</tempValueOfCenturyWarmingWinter>
-					<tempValueOfCenturyWarmingSpring>3.0
-					</tempValueOfCenturyWarmingSpring>
-					<tempValueOfCenturyWarmingSummer>3.0
-					</tempValueOfCenturyWarmingSummer>
-					<tempValueOfCenturyWarmingAutomn>3.0
-					</tempValueOfCenturyWarmingAutomn>
-					<incrementDuration>100.0</incrementDuration>
-					<incrementPower>1.0</incrementPower>
-				</environment.UpdateTemperature>
-			</processesEachStep>
-
-			<processesAtEnd>
-			</processesAtEnd>
-		</processes>
-		<useCemetery>false</useCemetery>
-	</species.DiadromousFishGroup>
-</list>
\ No newline at end of file

data/input/fishbidon

-<environment.GridBasinNetwork>
-  <basinNetworkFileName>data/input/BasinNetwork.csv</basinNetworkFileName>
-  <distanceGridFileName>data/input/distanceGrid.csv</distanceGridFileName>
-  <nbBasin>25</nbBasin>
-</environment.GridBasinNetwork>
\ No newline at end of file

data/input/northeastamerica/RIO_obs_NEA.xml

 <hashtable>
 	<entry>
-		<!--
-		
-		<java-class>fr.cemagref.simaqualife.kernel.AquaticWorld</java-class>-->
+		<!-- <java-class>fr.cemagref.simaqualife.kernel.AquaticWorld</java-class> -->
 		<java-class>environment.RIOBasinNetworkWithContinent</java-class>
-	
+
 		<fr.cemagref.observation.kernel.ObservablesHandler>
 			<observers>
 				<environment.RIOBasinNetworkObserverWithContinent>
@@ -27,29 +25,20 @@
 			<observers>
 				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
 					<graphType>LINE</graphType>
-					<title>Number of colonized
-						basins
-					</title>
+					<title>Number of populated basins</title>
 					<xAxisLabel>Time (season)</xAxisLabel>
-					<yAxisLabel>number of basins</yAxisLabel>
-					<variableName>getNbColonizedBasins</variableName>
-				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
-				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
-					<graphType>LINE</graphType>
-					<title>Total Abundance</title>
-					<xAxisLabel>Time (season)</xAxisLabel>
-					<yAxisLabel>number of fishes</yAxisLabel>
-					<variableName>getFishEffective</variableName>
+					<yAxisLabel>Number of basins</yAxisLabel>
+					<variableName>getNbPopulatedBasins</variableName>
 				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+
 				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
 					<graphType>LINE</graphType>
 					<title>Abundance of spawners</title>
 					<xAxisLabel>Time (season)</xAxisLabel>
-					<yAxisLabel>number
-						of fishes
-					</yAxisLabel>
+					<yAxisLabel>Number of fish</yAxisLabel>
 					<variableName>getSpawnerEffective</variableName>
 				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+
 				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
 					<graphType>LINE</graphType>
 					<title>Abundance of male spawners</title>
@@ -57,69 +46,68 @@
 					<yAxisLabel>number of fishes</yAxisLabel>
 					<variableName>getMaleSpawnerEffective</variableName>
 				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+
 				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
 					<graphType>LINE</graphType>
 					<title>Abundance of female spawners</title>
 					<xAxisLabel>Time (season)</xAxisLabel>
-					<yAxisLabel>number
-						of fishes
-					</yAxisLabel>
+					<yAxisLabel>number of fishes </yAxisLabel>
 					<variableName>getFemaleSpawnerEffective</variableName>
 				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+
 				<observer.TemporalRangeSerieChart>
 					<title>Range distribution</title>
 					<xAxisLabel>Time (season)</xAxisLabel>
 					<yAxisLabel>latitude</yAxisLabel>
-					<variableName>getRangeDistributionWithLat</variableName>
+					<variableName>getRangeSpawnerDistributionWithLat</variableName>
 				</observer.TemporalRangeSerieChart>
+			</observers>
+		</fr.cemagref.observation.kernel.ObservablesHandler>
+	</entry>
+
+	<entry>
+		<java-class>analysis.AnalyseFishDistribution</java-class>
+		<fr.cemagref.observation.kernel.ObservablesHandler>
+			<observers>
 				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
 					<graphType>LINE</graphType>
-					<title>Mean age at first reproduction for female</title>
-					<xAxisLabel>Time (season)</xAxisLabel>
-					<yAxisLabel>age (year)</yAxisLabel>
-					<variableName>getMeanAgeOfFirstReprodutionForFemale</variableName>
-				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
-				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
-					<graphType>LINE</graphType>
-					<title>Mean age at first reproduction
-						for male