some test from Rougier et al

src/main/java/miscellaneous/EasyABC.java

@@ -21,30 +21,37 @@ import fr.cemagref.simaqualife.pilot.Pilot;
 
 public class EasyABC {
 
-    public static void runSimulation(String[] batchArgs, String outputfilename, String[] paramNames, double[] paramValues) throws Exception {
-        try {
-            Pilot pilot = new Pilot();
-            BatchRunner runner = new BatchRunner(pilot);
-            pilot.init();
-            runner.parseArgs(batchArgs, false, true, false);
-            pilot.load();
-            ReflectUtils.setFieldValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0), "processes.processesAtEnd.0.fileNameOutput", outputfilename);
-            for (int i = 0; i < paramNames.length; i++) {
-                ReflectUtils.setFieldValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0), paramNames[i], paramValues[i]);
-            }
-            pilot.run();
-            // For forcing resources releasing (like shp files)
-            System.gc();
-        } catch (Throwable e) {
-            System.out.println(e.getMessage());
-            e.printStackTrace();
-        }
-    }
+	public static void runSimulation(String[] batchArgs, String outputfilename, String[] paramNames, double[] paramValues)
+			throws Exception {
+		try {
+			Pilot pilot = new Pilot();
+			BatchRunner runner = new BatchRunner(pilot);
+			pilot.init();
+			runner.parseArgs(batchArgs, false, true, false);
+			pilot.load();
+			ReflectUtils.setFieldValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0),
+					"processes.processesAtEnd.0.fileNameOutput", outputfilename);
+			for (int i = 0; i < paramNames.length; i++) {
+				ReflectUtils.setFieldValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0), paramNames[i],
+						paramValues[i]);
+			}
+			pilot.run();
+			// For forcing resources releasing (like shp files)
+			System.gc();
+		} catch (Throwable e) {
+			System.out.println(e.getMessage());
+			e.printStackTrace();
+		}
+	}
 
-    public static void main(String[] args) throws Exception {
-        runSimulation("-simDuration 400 -simBegin 2 -timeStepDuration 1 -groups data/input/fishTryRealBV_CC.xml -env data/input/BNtryRealBasins.xml -observers data/input/obsTryReal.xml".split("\\ "),
-                "data/output/tsointsoin", new String[]{"processes.processesEachStep.5.tempMinRep", "processes.processesEachStep.4.tempMinMortGenInRiv",
-                    "processes.processesEachStep.5.ratioS95_S50", "processes.processesEachStep.3.pHomingAfterEquil"},
-                new double[]{10, 8, 2, 0.7});
-    }
+
+	public static void main(String[] args) throws Exception {
+		runSimulation(
+				"-simDuration 400 -simBegin 2 -timeStepDuration 1 -groups data/input/fishTryRealBV_CC.xml -env data/input/BNtryRealBasins.xml -observers data/input/obsTryRealABC.xml"
+						.split("\\ "),
+				"data/output/tsointsoin",
+				new String[] { "processes.processesEachStep.5.tempMinRep", "processes.processesEachStep.4.tempMinMortGenInRiv",
+						"processes.processesEachStep.5.ratioS95_S50", "processes.processesEachStep.3.pHomingAfterEquil" },
+				new double[] { 10, 8, 2, 0.7 });
+	}
 }