diff --git a/data/input/northeastamerica/RIO_obs_NEA.xml b/data/input/northeastamerica/RIO_obs_NEA.xml index f3ffb8d2a57699d6a1a6daf9b00a2c6d1dd4524e..edb3efbbc333bd2a3eb6422c460511d4fdfc2be2 100644 --- a/data/input/northeastamerica/RIO_obs_NEA.xml +++ b/data/input/northeastamerica/RIO_obs_NEA.xml @@ -7,7 +7,7 @@ <title>North East America</title> <threshold>1000000</threshold> </environment.RIOBasinNetworkObserverWithContinent> - + <environment.RIOBasinNetworkObserverPresence> <title>Shad presence in North East America</title> <presenceFileName>data/input/northeastamerica/nea_presence.csv</presenceFileName> @@ -16,40 +16,130 @@ </observers> </fr.cemagref.observation.kernel.ObservablesHandler> </entry> - <!-- <entry> <java-class>species.DiadromousFishGroup</java-class> <fr.cemagref.observation.kernel.ObservablesHandler> <observers> - <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Number of colonized - basins</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of basins</yAxisLabel> <variableName>getNbColonizedBasins</variableName> - </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <graphType>LINE</graphType> <title>Total Abundance</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel> - <variableName>getFishEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <graphType>LINE</graphType> <title>Abundance of spawners</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number - of fishes</yAxisLabel> <variableName>getSpawnerEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Abundance of male spawners</title> - <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel> <variableName>getMaleSpawnerEffective</variableName> - </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <graphType>LINE</graphType> <title>Abundance of female spawners</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number - of fishes</yAxisLabel> <variableName>getFemaleSpawnerEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <miscellaneous.TemporalRangeSerieChart> <title>Range distribution</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>latitude</yAxisLabel> - <variableName>getRangeDistributionWithLat</variableName> </miscellaneous.TemporalRangeSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <graphType>LINE</graphType> <title>Mean age at first reproduction for female</title> <xAxisLabel>Time (season)</xAxisLabel> - <yAxisLabel>age (year)</yAxisLabel> <variableName>getMeanAgeOfFirstReprodutionForFemale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Mean age at first reproduction - for male</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>age (year)</yAxisLabel> <variableName>getMeanAgeOfFirstReprodutionForMale</variableName> - </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <graphType>LINE</graphType> <title>Statistic for male spawners age</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel></yAxisLabel> - <variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Statistic for female - spawners age</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel></yAxisLabel> <variableName>computeFemaleSpawnerForFirstTimeSummaryStatistic</variableName> - </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <graphType>LINE</graphType> <title>Mean length at first reproduction for female</title> <xAxisLabel>Time (season)</xAxisLabel> - <yAxisLabel>length (cm)</yAxisLabel> <variableName>getMeanLengthOfFirstReprodutionForFemale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> - <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Mean length at first - reproduction for male</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>length (cm)</yAxisLabel> <variableName>getMeanLengthOfFirstReprodutionForMale</variableName> - </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> </observers> </fr.cemagref.observation.kernel.ObservablesHandler> - </entry> <entry> <java-class>environment.RiverBasin</java-class> <fr.cemagref.observation.kernel.ObservablesHandler> <observers> - <miscellaneous.TemporalSerieChartForBasin> <graphType>LINE</graphType> <title>Number of juveniles</title> <xAxisLabel>Time - (season)</xAxisLabel> <yAxisLabel>number of juveniles</yAxisLabel> <variableName>getJuvenileNumber</variableName> </miscellaneous.TemporalSerieChartForBasin> - <miscellaneous.TemporalSerieChartForBasin> <graphType>LINE</graphType> <title>% Autochtone</title> <xAxisLabel>Time (season)</xAxisLabel> - <yAxisLabel>% Autochtone</yAxisLabel> <variableName>getLastPercentageOfAutochtone</variableName> </miscellaneous.TemporalSerieChartForBasin> - </observers> </fr.cemagref.observation.kernel.ObservablesHandler> </entry> --> + <entry> + <java-class>species.DiadromousFishGroup</java-class> + <fr.cemagref.observation.kernel.ObservablesHandler> + <observers> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Number of colonized + basins + </title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>number of basins</yAxisLabel> + <variableName>getNbColonizedBasins</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Total Abundance</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>number of fishes</yAxisLabel> + <variableName>getFishEffective</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Abundance of spawners</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>number + of fishes + </yAxisLabel> + <variableName>getSpawnerEffective</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Abundance of male spawners</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>number of fishes</yAxisLabel> + <variableName>getMaleSpawnerEffective</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Abundance of female spawners</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>number + of fishes + </yAxisLabel> + <variableName>getFemaleSpawnerEffective</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <miscellaneous.TemporalRangeSerieChart> + <title>Range distribution</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>latitude</yAxisLabel> + <variableName>getRangeDistributionWithLat</variableName> + </miscellaneous.TemporalRangeSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Mean age at first reproduction for female</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>age (year)</yAxisLabel> + <variableName>getMeanAgeOfFirstReprodutionForFemale</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Mean age at first reproduction + for male + </title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>age (year)</yAxisLabel> + <variableName>getMeanAgeOfFirstReprodutionForMale</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Statistic for male spawners age</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel></yAxisLabel> + <variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Statistic for female + spawners age + </title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel></yAxisLabel> + <variableName>computeFemaleSpawnerForFirstTimeSummaryStatistic</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Mean length at first reproduction for female</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>length (cm)</yAxisLabel> + <variableName>getMeanLengthOfFirstReprodutionForFemale</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + <graphType>LINE</graphType> + <title>Mean length at first + reproduction for male + </title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>length (cm)</yAxisLabel> + <variableName>getMeanLengthOfFirstReprodutionForMale</variableName> + </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> + </observers> + </fr.cemagref.observation.kernel.ObservablesHandler> + </entry> + <entry> + <java-class>environment.RiverBasin</java-class> + <fr.cemagref.observation.kernel.ObservablesHandler> + <observers> + <miscellaneous.TemporalSerieChartForBasin> + <graphType>LINE</graphType> + <title>Number of juveniles</title> + <xAxisLabel>Time + (season) + </xAxisLabel> + <yAxisLabel>number of juveniles</yAxisLabel> + <variableName>getJuvenileNumber</variableName> + </miscellaneous.TemporalSerieChartForBasin> + <miscellaneous.TemporalSerieChartForBasin> + <graphType>LINE</graphType> + <title>% Autochtone</title> + <xAxisLabel>Time (season)</xAxisLabel> + <yAxisLabel>% Autochtone</yAxisLabel> + <variableName>getLastPercentageOfAutochtone</variableName> + </miscellaneous.TemporalSerieChartForBasin> + </observers> + </fr.cemagref.observation.kernel.ObservablesHandler> + </entry> + </hashtable> \ No newline at end of file