move EasyABS and EsayRun into analysis

src/main/java/miscellaneous/EasyABC.java → src/main/java/analysis/EasyABC.java

@@ -14,10 +14,11 @@
  * You should have received a copy of the GNU General Public License
  * along with this program.  If not, see <http://www.gnu.org/licenses/>.
  */
-package miscellaneous;
+package analysis;
 
 import fr.cemagref.simaqualife.extensions.pilot.BatchRunner;
 import fr.cemagref.simaqualife.pilot.Pilot;
+import miscellaneous.ReflectUtils;
 
 public class EasyABC {
 

src/main/java/miscellaneous/EasyRun.java → src/main/java/analysis/EasyRun.java

@@ -14,12 +14,14 @@
  * You should have received a copy of the GNU General Public License
  * along with this program.  If not, see <http://www.gnu.org/licenses/>.
  */
-package miscellaneous;
+package analysis;
 
+import java.util.Arrays;
 import java.util.List;
 
 import fr.cemagref.simaqualife.extensions.pilot.BatchRunner;
 import fr.cemagref.simaqualife.pilot.Pilot;
+import miscellaneous.ReflectUtils;
 
 public class EasyRun {
 
@@ -68,9 +70,14 @@ public class EasyRun {
 		return (List) ReflectUtils.getValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0), targetPath);
 	}
 
+	// public static double[][] getValuesFromAquanismGroupProcess(String targetPath) throws Exception {
+	// return (double[][]) ReflectUtils.getValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0),
+	// targetPath);
+	// }
 
-	public static double[][] getValuesFromAquanismGroupProcess(String targetPath) throws Exception {
-		return (double[][]) ReflectUtils.getValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0), targetPath);
+
+	public static String[][] getValuesFromAquanismGroupProcess(String targetPath) throws Exception {
+		return (String[][]) ReflectUtils.getValueFromPath(pilot.getAquaticWorld().getAquaNismsGroupsList().get(0), targetPath);
 	}
 
 
@@ -92,13 +99,13 @@ public class EasyRun {
 
 		runSimulation(batchArguments, "tsointsoin", parameterNames, parameterValues);
 
-		// System.out.println("\nAnalyseSpawnerFeatures");
-		// System.out.println("basin_id, female_mean_age, male_mean_age, percent_primiparous");
-		// double[][] spawnerRunResults = getValuesFromAquanismGroupProcess("processes.processesEachStep.8.exportToR");
-		// for (double[] result : spawnerRunResults) {
-		// System.out.println(Arrays.toString(result));
-		// }
-		//
+		System.out.println("\nAnalyseSpawnerFeatures");
+		System.out.println("basin_id, female_mean_age, male_mean_age, percent_primiparous");
+		String[][] spawnerRunResults = getValuesFromAquanismGroupProcess("processes.processesEachStep.8.exportToR");
+		for (String[] result : spawnerRunResults) {
+			System.out.println(Arrays.toString(result));
+		}
+
 		// System.out.println("\nAnalyseFishDistribution");
 		// System.out.println("southern_basin_id, northern_basin_id, basin_centroid_latitude,
 		// effective_centroid_latitude");