Commit 2293e9d4 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

snakemake-5.7.4

parent a5dc5a35
#!/bin/bash
export PYTHONPATH=''
source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir -p ./.log/out/ ./.log/err/ mkdir -p ./.log/out/ ./.log/err/
#PYTHONPATH=''
source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
snakemake \ snakemake \
--snakefile $1 \ --snakefile $1 \
......
#!/bin/bash
export PYTHONPATH=''
source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir -p report/ mkdir -p report/
PYTHONPATH=''
source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
snakemake \ snakemake \
--snakefile $1 \ --snakefile $1 \
......
PYTHONPATH='' #!/bin/bash
source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda export PYTHONPATH=''
source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
snakemake \ snakemake \
--snakefile $1 \ --snakefile $1 \
......
PYTHONPATH='' #!/bin/bash
source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda export PYTHONPATH=''
source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
snakemake \ snakemake \
--snakefile $1 \ --snakefile $1 \
......
#!/bin/bash
export PYTHONPATH=''
source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
mkdir -p report/ mkdir -p report/
PYTHONPATH=''
source /usr/local/genome/Anaconda3-5.1.0/envs/snakemake-5.2.0/snakemake-5.2.0_conda
snakemake \ snakemake \
--snakefile $1 \ --snakefile $1 \
......
configfile: "./config.json" configfile: "./config.json"
MEM=config["MEM"]
SAMPLES=config["SAMPLES"] SAMPLES=config["SAMPLES"]
rule all: rule all:
......
#!/bin/sh #!/bin/sh
# properties = {properties} # properties = {properties}
export PYTHONPATH='' export PYTHONPATH=''
source activate snakemake-5.4.5 source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
conda activate snakemake-5.7.4
{exec_job} {exec_job}
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