diff --git a/.gitignore b/.gitignore
index 8d628c8729cc93edc06c6b61d1495f3116bdbf39..c3de72e755a00b713cf97307de32cfaf5a60b206 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,5 +1,7 @@
-.log/
+LOGS/
 .snakemake/
 DATA/
 work/
 report/
+.Rproj.user
+.Rhistory
diff --git a/DADA2.Rproj b/DADA2.Rproj
new file mode 100644
index 0000000000000000000000000000000000000000..8e3c2ebc99e2e337f7d69948b93529a437590b27
--- /dev/null
+++ b/DADA2.Rproj
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
diff --git a/RunSnake.sh b/RunSnake.sh
index 77636ab89b812337af962c82341e54b90a365b72..b7945965d03ee01ee360fcc231329a30b7726023 100755
--- a/RunSnake.sh
+++ b/RunSnake.sh
@@ -3,7 +3,7 @@ export PYTHONPATH=''
 source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4
 
-mkdir -p ./.log/out/ ./.log/err/
+mkdir -p LOGS/
 
 snakemake \
 --snakefile $1 \
diff --git a/cluster.json b/cluster.json
index 90ebd3683fd10e9036469bad0edee69062fddd94..a79100f9607c71a7cd3598310dc94b2175525300 100644
--- a/cluster.json
+++ b/cluster.json
@@ -1,9 +1,9 @@
 {
 	"__default__" :
 	{
-		"out" : "./.log/out/",
-		"err" : "./.log/err/",
-		"queue" : "short.q",
+		"out" : "LOGS/",
+		"err" : "LOGS/",
+		"queue" : "maiage.q",
 		"cluster" : ""
 	}
 }
diff --git a/global.smk b/global.smk
index cff37ee7198c54e9aa0cc0a7cf3c60cfc8413953..3818bb983cb957825a55e4aa0852955e81c8a365 100644
--- a/global.smk
+++ b/global.smk
@@ -15,7 +15,8 @@ rule all:
 		"report/clusters_metrics.html",
 		"report/affiliations_metrics.html",
 		"report/abundance.biom",
-		"report/abundance.tsv"
+		"report/abundance.tsv",
+		"report/tree.nwk"
 
 include: "quality.smk"
 include: "preprocess.smk"
diff --git a/qsubSnake.sh b/qsubSnake.sh
index c45cd044f1139e4b310c4cdf0ac5559a4826f351..7dc75b2ad9bd3ad560a9c209712e0317a8dafb6b 100755
--- a/qsubSnake.sh
+++ b/qsubSnake.sh
@@ -1,2 +1,2 @@
-mkdir -p ./.log/out/ ./.log/err/
-qsub -V -cwd -o ./.log/out/ -e ./.log/err/ -q maiage.q,long.q -N `basename $1` RunSnake.sh $1
+mkdir -p LOGS/
+qsub -V -cwd -o LOGS/ -e LOGS/ -q maiage.q,long.q -N `basename $1` RunSnake.sh $1