Commit 4a18f66e authored by Midoux Cedric's avatar Midoux Cedric
Browse files

tree.nwk

parent 0e6242bf
...@@ -55,7 +55,8 @@ rule tree: ...@@ -55,7 +55,8 @@ rule tree:
biom = "work/FROGS/affiliation.biom" biom = "work/FROGS/affiliation.biom"
output: output:
html = "work/FROGS/tree.html", html = "work/FROGS/tree.html",
nwk = "work/FROGS/tree.nwk" nwk = "work/FROGS/tree.nwk",
log = "work/FROGS/tree.log"
threads: threads:
config["THREADS"] config["THREADS"]
shell: shell:
...@@ -63,10 +64,11 @@ rule tree: ...@@ -63,10 +64,11 @@ rule tree:
"&& " "&& "
"tree.py " "tree.py "
"--nb-cpus {threads} " "--nb-cpus {threads} "
"--input-sequences {input.fasta} " "--input-otu {input.fasta} "
"--biom-file {input.biom} " "--biomfile {input.biom} "
"--html {output.html} "
"--out-tree {output.nwk} " "--out-tree {output.nwk} "
"--html {output.html} "
"--log-file {output.log}"
"&& " "&& "
"conda deactivate" "conda deactivate"
......
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