Commit 0361b126 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

Add new samples

parent 5da4210e
......@@ -100,7 +100,13 @@ with open("user_ko-sort.txt", "r") as f:
```bash
join -t $'\t' report/count-genes_FGS-J80_A-coassembly.tsv report/count-genes_FGS-J80_B-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J177_A-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J177_B-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J177_B-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J218_A-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J218_B-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J281_A-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J281_B-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J462_A-coassembly.tsv | \
join -t $'\t' - report/count-genes_FGS-J462_B-coassembly.tsv | \
sed 's/__/0_/' | \
sort -k1,1 \
> Table/count-genes_coassembly.tsv
......@@ -114,7 +120,7 @@ join --check-order -t $'\t' -e NA -a1 -12 -21 -o 1.1,0,2.2 - work/ghostKOALA/KO_
sort -k1,1 \
> Table/KO_coassembly.tsv
echo -e "gene\tJ80_A\tJ80_B\tJ177_A\tJ177_B\ttaxID_kaijuNR\ttaxID_name\tKO_ghostKOALA\tKO_name"> Table/digestomics.tsv
echo -e "gene\tJ80_A\tJ80_B\tJ177_A\tJ177_B\tJ218_A\tJ218_B\tJ281_A\tJ281_B\tJ462_A\tJ462_B\ttaxID_kaijuNR\ttaxID_name\tKO_ghostKOALA\tKO_name"> Table/digestomics.tsv
join --check-order -t $'\t' -e NA -a1 Table/count-genes_coassembly.tsv Table/taxName_coassembly.tsv | \
join --check-order -t $'\t' -e NA -a1 - Table/KO_coassembly.tsv \
......
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