Commit 337827bf authored by Midoux Cedric's avatar Midoux Cedric
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Split with seqkit split2

parent 4ee40425
...@@ -30,12 +30,8 @@ ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_a ...@@ -30,12 +30,8 @@ ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_a
### Submit analysis ### Submit analysis
```bash ```bash
awk 'NR<=2000000' work/FGS/coassembly_FGS.faa > work/FGS/coassembly_FGS-1.faa conda activate seqkit-0.10.1
awk 'NR>=2000001&&NR<=4000000' work/FGS/coassembly_FGS.faa > work/FGS/coassembly_FGS-2.faa seqkit split2 --by-size 1000000 --out-dir work/FGS/split work/FGS/coassembly_FGS.faa
awk 'NR>=4000001&&NR<=6000000' work/FGS/coassembly_FGS.faa > work/FGS/coassembly_FGS-3.faa
awk 'NR>=6000001&&NR<=8000000' work/FGS/coassembly_FGS.faa > work/FGS/coassembly_FGS-4.faa
awk 'NR>=8000001&&NR<=10000000' work/FGS/coassembly_FGS.faa > work/FGS/coassembly_FGS-5.faa
awk 'NR>=10000001' work/FGS/coassembly_FGS.faa > work/FGS/coassembly_FGS-6.faa
``` ```
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