Commit 2e801311 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

assembly done

parent 1329eb4e
......@@ -49,7 +49,8 @@ rule megahit:
input:
unpack(assembly_input)
output:
contigs = "work/megahit/{reads}/{reads}.contigs.fa"
contigs = "work/megahit/{reads}/{reads}.contigs.fa",
done = "work/megahit/{reads}/done"
threads:
20
params:
......@@ -74,7 +75,8 @@ rule metaspades:
input:
unpack(assembly_input)
output:
contigs = "work/metaSPADES/{reads}/{reads}.contigs.fasta"
contigs = "work/metaSPADES/{reads}/{reads}.contigs.fasta",
done = "work/metaSPADES/{reads}/done"
threads:
20
params:
......@@ -91,6 +93,8 @@ rule metaspades:
"{params.input} "
"-o {params.output} "
" ; "
" touch {output.done} "
" ; "
"conda activate seqkit-0.10.1 "
" ; "
"seqkit "
......
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