Commit 508aa463 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

htseq count order

parent 204ab1d0
...@@ -73,8 +73,10 @@ rule count_gene: ...@@ -73,8 +73,10 @@ rule count_gene:
"--type CDS " "--type CDS "
"--idattr ID " "--idattr ID "
"--mode union " "--mode union "
"--nonunique none "
"--order pos "
#"--samout {output} " #"--samout {output} "
"{input.bam} " "{input.bam} "
"{input.gff} " "{input.gff} "
" > " " > "
"{output} " "{output} "
\ No newline at end of file
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