source conda.sh

6c0ba280 · Midoux Cedric · c2974c8b · 6c0ba280 · 6c0ba280 · 6c0ba280
Commit 6c0ba280 authored Aug 18, 2020 by Midoux Cedric
--- a/RunSnake.sh
+++ b/RunSnake.sh
 #!/bin/bash
 export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4

 mkdir -p ./.log/out/ ./.log/err/

--- a/RunSnake_graph.sh
+++ b/RunSnake_graph.sh
 #!/bin/bash
 export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4

 mkdir -p report/

--- a/RunSnake_printshellcmds-forceall.sh
+++ b/RunSnake_printshellcmds-forceall.sh
 #!/bin/bash
 export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4

 snakemake \

--- a/RunSnake_printshellcmds.sh
+++ b/RunSnake_printshellcmds.sh
 #!/bin/bash
 export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4

 snakemake \

--- a/RunSnake_report.sh
+++ b/RunSnake_report.sh
 #!/bin/bash
 export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4

 mkdir -p report/

--- a/jobscript.sh
+++ b/jobscript.sh
 #!/bin/sh
 # properties = {properties}
 export PYTHONPATH=''
+source /usr/local/genome/Anaconda2-5.1.0/etc/profile.d/conda.sh
 conda activate snakemake-5.7.4
 {exec_job}