Commit 80504772 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

swissprot

parent cada659b
...@@ -63,6 +63,8 @@ def gff_input(wildcards): ...@@ -63,6 +63,8 @@ def gff_input(wildcards):
def db_input(wildcards): def db_input(wildcards):
if wildcards.db == "nr": if wildcards.db == "nr":
return {"db": "/db/outils/diamond-0.9.24/nr_tax.dmnd"} return {"db": "/db/outils/diamond-0.9.24/nr_tax.dmnd"}
elif wildcards.db == "swissprot":
return {"db": "/db/outils/diamond-0.9.26/uniprot_swissprot.dmnd"}
elif wildcards.db == "phrogs": elif wildcards.db == "phrogs":
return {"db": "/projet/maiage/save/cmidoux/PhROGs/phrogs.dmnd"} return {"db": "/projet/maiage/save/cmidoux/PhROGs/phrogs.dmnd"}
......
...@@ -13,6 +13,7 @@ rule all: ...@@ -13,6 +13,7 @@ rule all:
expand("report/count-contigs-coassembly-{sample}.tsv", sample=config["SAMPLES"]), expand("report/count-contigs-coassembly-{sample}.tsv", sample=config["SAMPLES"]),
expand("report/count-genes-coassembly-{sample}.tsv", sample=config["SAMPLES"]), expand("report/count-genes-coassembly-{sample}.tsv", sample=config["SAMPLES"]),
"report/diamond_nr_coassembly.tsv", "report/diamond_nr_coassembly.tsv",
"report/diamond_swissprot_coassembly.tsv",
"report/contigs_coassembly-taxNames.tsv", "report/contigs_coassembly-taxNames.tsv",
"report/genes_coassembly-taxNames.tsv", "report/genes_coassembly-taxNames.tsv",
#catalogue #catalogue
......
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