Commit 80f53fb9 authored by Midoux Cedric's avatar Midoux Cedric

spades highmem.q 500G

parent 0a6b2da8
......@@ -82,7 +82,7 @@ rule metaspades:
20
params:
min_len = config["CONTIGS_LEN"],
mem_tot = 250,
mem_tot = 500,
input = lambda wildcards, input: "-1 %s -2 %s"%(" -1 ".join(input.R1), " -2 ".join(input.R2)) if set(['R1', 'R2']).issubset(input.keys()) else "--12 %s"%" --12 ".join(input.R1R2),
output = lambda wildcards, output: os.path.dirname(str(output.contigs))
shell:
......
......@@ -23,8 +23,8 @@
},
"metaspades" :
{
"queue" : "highmem.q,maiage.q",
"cluster" : "-l h_vmem=12G"
"queue" : "highmem.q",
"cluster" : "-l h_vmem=25G"
},
"diamond" :
{
......
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