Commit 816196d1 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

samtools sort

parent 184bad7b
......@@ -40,15 +40,11 @@ rule mapping:
"-2 {input.R2} "
"-S - "
"| "
"samtools view "
"--threads {threads} "
"-b "
"-o {output.bam} "
"&& "
"samtools sort "
"--threads {threads} "
"{output.bam} "
"--output-fmt BAM "
"-o {output.bam} "
"- "
"&& "
"samtools index "
"{output.bam} "
......
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