diff --git a/RunSnake.sh b/RunSnake.sh index 05d7c2207f24c425f85acf99859c1d5b3da59d08..278590d5798a413ceb837d9bcccf7c050b2b0c43 100755 --- a/RunSnake.sh +++ b/RunSnake.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 mkdir -p ./.log/out/ ./.log/err/ diff --git a/RunSnake_graph.sh b/RunSnake_graph.sh index c59a79f95b603171d5aba1646336fc325dc2e994..b866ab3b81adea04dfcb4a8620a8250afe40eecb 100755 --- a/RunSnake_graph.sh +++ b/RunSnake_graph.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 mkdir -p report/ diff --git a/RunSnake_printshellcmds-forceall.sh b/RunSnake_printshellcmds-forceall.sh index 54406aab7f5a031d49956b347c5310bb2e9a67bf..0a4b4ac64b7a36a8bd408c336942428c7e951097 100755 --- a/RunSnake_printshellcmds-forceall.sh +++ b/RunSnake_printshellcmds-forceall.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 snakemake \ --snakefile $1 \ diff --git a/RunSnake_printshellcmds.sh b/RunSnake_printshellcmds.sh index 0db1e5eab3e44475bfc0c15ba06d2fac2beab607..ff59af3baeb2e5946762b7e185ab43c71cb41fb3 100755 --- a/RunSnake_printshellcmds.sh +++ b/RunSnake_printshellcmds.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 snakemake \ --snakefile $1 \ diff --git a/RunSnake_report.sh b/RunSnake_report.sh index f16f3d712e2138bbc5a4763c4041877c1231e96f..72dbb782989ba0ce24e07d133eafdc41b57881fd 100755 --- a/RunSnake_report.sh +++ b/RunSnake_report.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 mkdir -p report/ diff --git a/jobscript.sh b/jobscript.sh index abc387da9313821a13c1400428920f5095044381..995ce763196dd939c44fc5d1a733a69fbb0145ca 100644 --- a/jobscript.sh +++ b/jobscript.sh @@ -1,5 +1,5 @@ #!/bin/sh # properties = {properties} export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 {exec_job}