From acb0e2b91bbdb2e3d90f13a2339862204e4de60e Mon Sep 17 00:00:00 2001 From: Cedric Midoux <cedric.midoux@inra.fr> Date: Fri, 15 Nov 2019 18:09:56 +0100 Subject: [PATCH] snakemake 5.7.4 --- RunSnake.sh | 2 +- RunSnake_graph.sh | 2 +- RunSnake_printshellcmds-forceall.sh | 2 +- RunSnake_printshellcmds.sh | 2 +- RunSnake_report.sh | 2 +- jobscript.sh | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/RunSnake.sh b/RunSnake.sh index 05d7c22..278590d 100755 --- a/RunSnake.sh +++ b/RunSnake.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 mkdir -p ./.log/out/ ./.log/err/ diff --git a/RunSnake_graph.sh b/RunSnake_graph.sh index c59a79f..b866ab3 100755 --- a/RunSnake_graph.sh +++ b/RunSnake_graph.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 mkdir -p report/ diff --git a/RunSnake_printshellcmds-forceall.sh b/RunSnake_printshellcmds-forceall.sh index 54406aa..0a4b4ac 100755 --- a/RunSnake_printshellcmds-forceall.sh +++ b/RunSnake_printshellcmds-forceall.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 snakemake \ --snakefile $1 \ diff --git a/RunSnake_printshellcmds.sh b/RunSnake_printshellcmds.sh index 0db1e5e..ff59af3 100755 --- a/RunSnake_printshellcmds.sh +++ b/RunSnake_printshellcmds.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 snakemake \ --snakefile $1 \ diff --git a/RunSnake_report.sh b/RunSnake_report.sh index f16f3d7..72dbb78 100755 --- a/RunSnake_report.sh +++ b/RunSnake_report.sh @@ -1,6 +1,6 @@ #!/bin/bash export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 mkdir -p report/ diff --git a/jobscript.sh b/jobscript.sh index abc387d..995ce76 100644 --- a/jobscript.sh +++ b/jobscript.sh @@ -1,5 +1,5 @@ #!/bin/sh # properties = {properties} export PYTHONPATH='' -source activate snakemake-5.4.5 +source activate snakemake-5.7.4 {exec_job} -- GitLab