From acb0e2b91bbdb2e3d90f13a2339862204e4de60e Mon Sep 17 00:00:00 2001
From: Cedric Midoux <cedric.midoux@inra.fr>
Date: Fri, 15 Nov 2019 18:09:56 +0100
Subject: [PATCH] snakemake 5.7.4
---
RunSnake.sh | 2 +-
RunSnake_graph.sh | 2 +-
RunSnake_printshellcmds-forceall.sh | 2 +-
RunSnake_printshellcmds.sh | 2 +-
RunSnake_report.sh | 2 +-
jobscript.sh | 2 +-
6 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/RunSnake.sh b/RunSnake.sh
index 05d7c22..278590d 100755
--- a/RunSnake.sh
+++ b/RunSnake.sh
@@ -1,6 +1,6 @@
#!/bin/bash
export PYTHONPATH=''
-source activate snakemake-5.4.5
+source activate snakemake-5.7.4
mkdir -p ./.log/out/ ./.log/err/
diff --git a/RunSnake_graph.sh b/RunSnake_graph.sh
index c59a79f..b866ab3 100755
--- a/RunSnake_graph.sh
+++ b/RunSnake_graph.sh
@@ -1,6 +1,6 @@
#!/bin/bash
export PYTHONPATH=''
-source activate snakemake-5.4.5
+source activate snakemake-5.7.4
mkdir -p report/
diff --git a/RunSnake_printshellcmds-forceall.sh b/RunSnake_printshellcmds-forceall.sh
index 54406aa..0a4b4ac 100755
--- a/RunSnake_printshellcmds-forceall.sh
+++ b/RunSnake_printshellcmds-forceall.sh
@@ -1,6 +1,6 @@
#!/bin/bash
export PYTHONPATH=''
-source activate snakemake-5.4.5
+source activate snakemake-5.7.4
snakemake \
--snakefile $1 \
diff --git a/RunSnake_printshellcmds.sh b/RunSnake_printshellcmds.sh
index 0db1e5e..ff59af3 100755
--- a/RunSnake_printshellcmds.sh
+++ b/RunSnake_printshellcmds.sh
@@ -1,6 +1,6 @@
#!/bin/bash
export PYTHONPATH=''
-source activate snakemake-5.4.5
+source activate snakemake-5.7.4
snakemake \
--snakefile $1 \
diff --git a/RunSnake_report.sh b/RunSnake_report.sh
index f16f3d7..72dbb78 100755
--- a/RunSnake_report.sh
+++ b/RunSnake_report.sh
@@ -1,6 +1,6 @@
#!/bin/bash
export PYTHONPATH=''
-source activate snakemake-5.4.5
+source activate snakemake-5.7.4
mkdir -p report/
diff --git a/jobscript.sh b/jobscript.sh
index abc387d..995ce76 100644
--- a/jobscript.sh
+++ b/jobscript.sh
@@ -1,5 +1,5 @@
#!/bin/sh
# properties = {properties}
export PYTHONPATH=''
-source activate snakemake-5.4.5
+source activate snakemake-5.7.4
{exec_job}
--
GitLab