Commit b88960f0 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

kaiju threads

parent 4fd620b2
......@@ -8,8 +8,8 @@
},
"kaiju" :
{
"queue" : "highmem.q,maiage.q",
"cluster" : "-l h_vmem=10G"
"queue" : "highmem.q,maiage.q@n67,maiage.q@n68,maiage.q@n69",
"cluster" : "-l h_vmem=12G"
},
"khmer" :
{
......
......@@ -12,7 +12,7 @@ rule kaiju:
output:
"work/kaiju/{focus,[a-z]+}_{sample}.kaijuNR"
threads:
8
20
params:
input = lambda wildcards, input: "-i %s -j %s"%(input.R1, input.R2) if wildcards.focus == "reads" else "-i %s"%input
shell:
......
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