Commit b88960f0 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

kaiju threads

parent 4fd620b2
...@@ -8,8 +8,8 @@ ...@@ -8,8 +8,8 @@
}, },
"kaiju" : "kaiju" :
{ {
"queue" : "highmem.q,maiage.q", "queue" : "highmem.q,maiage.q@n67,maiage.q@n68,maiage.q@n69",
"cluster" : "-l h_vmem=10G" "cluster" : "-l h_vmem=12G"
}, },
"khmer" : "khmer" :
{ {
......
...@@ -12,7 +12,7 @@ rule kaiju: ...@@ -12,7 +12,7 @@ rule kaiju:
output: output:
"work/kaiju/{focus,[a-z]+}_{sample}.kaijuNR" "work/kaiju/{focus,[a-z]+}_{sample}.kaijuNR"
threads: threads:
8 20
params: params:
input = lambda wildcards, input: "-i %s -j %s"%(input.R1, input.R2) if wildcards.focus == "reads" else "-i %s"%input input = lambda wildcards, input: "-i %s -j %s"%(input.R1, input.R2) if wildcards.focus == "reads" else "-i %s"%input
shell: shell:
......
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