kaiju threads

cluster.json

@@ -8,8 +8,8 @@
 	},
 	"kaiju" :
 	{
-		"queue" : "highmem.q,maiage.q",
-		"cluster" : "-l h_vmem=10G"
+		"queue" : "highmem.q,maiage.q@n67,maiage.q@n68,maiage.q@n69",
+		"cluster" : "-l h_vmem=12G"
 	},
 	"khmer" :
 	{

kaiju.smk

@@ -12,7 +12,7 @@ rule kaiju:
 	output:
 		"work/kaiju/{focus,[a-z]+}_{sample}.kaijuNR"
 	threads:
-		8
+		20
 	params:
 		input = lambda wildcards, input: "-i %s -j %s"%(input.R1, input.R2) if wildcards.focus == "reads" else "-i %s"%input
 	shell: