diff --git a/DESCRIPTION b/DESCRIPTION
index 2b605d4ca2eaa276f6952873f1b5043c221d644c..caf68f5b4670b0531d9e052eb20d0293a83c6847 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
Package: airGR
Type: Package
Title: Suite of GR Hydrological Models for Precipitation-Runoff Modelling
-Version: 1.6.3.45
+Version: 1.6.3.46
Date: 2020-11-11
Authors@R: c(
person("Laurent", "Coron", role = c("aut", "trl"), comment = c(ORCID = "0000-0002-1503-6204")),
diff --git a/NEWS.md b/NEWS.md
index 20f105833d81adcc3c98e9594e9c79b1c6d5106a..abc45309a07d291d550da6dd200f4877f4f036fd 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -4,7 +4,7 @@
-### 1.6.3.45 Release Notes (2020-11-11)
+### 1.6.3.46 Release Notes (2020-11-11)
#### New features
diff --git a/R/RunModel_CemaNeigeGR5J.R b/R/RunModel_CemaNeigeGR5J.R
index 2d41be506a20dd5cebe5ef3e0ca5006aa5ada343..07d1bee96fdd0614b4074a9139bb63379b1bb7e4 100644
--- a/R/RunModel_CemaNeigeGR5J.R
+++ b/R/RunModel_CemaNeigeGR5J.R
@@ -1,180 +1,226 @@
-RunModel_CemaNeigeGR5J <- function(InputsModel,RunOptions,Param){
-
+RunModel_CemaNeigeGR5J <- function(InputsModel, RunOptions, Param) {
+
+ ## Initialization of variables
IsHyst <- inherits(RunOptions, "hysteresis")
NParam <- ifelse(test = IsHyst, yes = 9L, no = 7L)
NParamCN <- NParam - 5L
NStates <- 4L
FortranOutputs <- .FortranOutputs(GR = "GR5J", isCN = TRUE)
-
- ##Arguments_check
- if(inherits(InputsModel,"InputsModel")==FALSE){ stop("'InputsModel' must be of class 'InputsModel'") }
- if(inherits(InputsModel,"daily" )==FALSE){ stop("'InputsModel' must be of class 'daily' ") }
- if(inherits(InputsModel,"GR" )==FALSE){ stop("'InputsModel' must be of class 'GR' ") }
- if(inherits(InputsModel,"CemaNeige" )==FALSE){ stop("'InputsModel' must be of class 'CemaNeige' ") }
- if(inherits(RunOptions,"RunOptions" )==FALSE){ stop("'RunOptions' must be of class 'RunOptions' ") }
- if(inherits(RunOptions,"GR" )==FALSE){ stop("'RunOptions' must be of class 'GR' ") }
- if(inherits(RunOptions,"CemaNeige" )==FALSE){ stop("'RunOptions' must be of class 'CemaNeige' ") }
- if(!is.vector(Param) | !is.numeric(Param)){ stop("'Param' must be a numeric vector") }
- if(sum(!is.na(Param))!=NParam){ stop(paste("'Param' must be a vector of length ",NParam," and contain no NA",sep="")) }
- Param <- as.double(Param);
-
- Param_X1X3_threshold <- 1e-2
- Param_X4_threshold <- 0.5
- if (Param[1L] < Param_X1X3_threshold) {
- warning(sprintf("Param[1] (X1: production store capacity [mm]) < %.2f\n X1 set to %.2f", Param_X1X3_threshold, Param_X1X3_threshold))
- Param[1L] <- Param_X1X3_threshold
- }
- if (Param[3L] < Param_X1X3_threshold) {
- warning(sprintf("Param[3] (X3: routing store capacity [mm]) < %.2f\n X3 set to %.2f", Param_X1X3_threshold, Param_X1X3_threshold))
- Param[3L] <- Param_X1X3_threshold
+
+
+ ## Arguments_check
+ if (inherits(InputsModel, "InputsModel") == FALSE) {
+ stop("'InputsModel' must be of class 'InputsModel'")
+ }
+ if (inherits(InputsModel, "daily") == FALSE) {
+ stop("'InputsModel' must be of class 'daily'")
+ }
+ if (inherits(InputsModel, "GR") == FALSE) {
+ stop("'InputsModel' must be of class 'GR'")
+ }
+ if (inherits(InputsModel, "CemaNeige") == FALSE) {
+ stop("'InputsModel' must be of class 'CemaNeige'")
+ }
+ if (inherits(RunOptions, "RunOptions") == FALSE) {
+ stop("'RunOptions' must be of class 'RunOptions'")
+ }
+ if (inherits(RunOptions, "GR") == FALSE) {
+ stop("'RunOptions' must be of class 'GR'")
+ }
+ if (inherits(RunOptions, "CemaNeige") == FALSE) {
+ stop("'RunOptions' must be of class 'CemaNeige'")
+ }
+ if (!is.vector(Param) | !is.numeric(Param)) {
+ stop("'Param' must be a numeric vector")
+ }
+ if (sum(!is.na(Param)) != NParam) {
+ stop(paste("'Param' must be a vector of length", NParam, "and contain no NA"))
+ }
+ Param <- as.double(Param)
+
+
+ Param_X1X3_threshold <- 1e-2
+ Param_X4_threshold <- 0.5
+ if (Param[1L] < Param_X1X3_threshold) {
+ warning(sprintf("Param[1] (X1: production store capacity [mm]) < %.2f\n X1 set to %.2f", Param_X1X3_threshold, Param_X1X3_threshold))
+ Param[1L] <- Param_X1X3_threshold
+ }
+ if (Param[3L] < Param_X1X3_threshold) {
+ warning(sprintf("Param[3] (X3: routing store capacity [mm]) < %.2f\n X3 set to %.2f", Param_X1X3_threshold, Param_X1X3_threshold))
+ Param[3L] <- Param_X1X3_threshold
+ }
+ if (Param[4L] < Param_X4_threshold) {
+ warning(sprintf("Param[4] (X4: unit hydrograph time constant [d]) < %.2f\n X4 set to %.2f", Param_X4_threshold, Param_X4_threshold))
+ Param[4L] <- Param_X4_threshold
+ }
+
+ ## Input_data_preparation
+ if (identical(RunOptions$IndPeriod_WarmUp, as.integer(0))) {
+ RunOptions$IndPeriod_WarmUp <- NULL
+ }
+ IndPeriod1 <- c(RunOptions$IndPeriod_WarmUp,RunOptions$IndPeriod_Run)
+ LInputSeries <- as.integer(length(IndPeriod1))
+ IndPeriod2 <- (length(RunOptions$IndPeriod_WarmUp) + 1):LInputSeries
+ ParamCemaNeige <- Param[(length(Param) - 1 - 2 * as.integer(IsHyst)):length(Param)]
+ NParamMod <- as.integer(length(Param) - (2 + 2 * as.integer(IsHyst)))
+ ParamMod <- Param[1:NParamMod]
+ NLayers <- length(InputsModel$LayerPrecip)
+ NStatesMod <- as.integer(length(RunOptions$IniStates) - NStates * NLayers)
+ ExportDatesR <- "DatesR" %in% RunOptions$Outputs_Sim
+ ExportStateEnd <- "StateEnd" %in% RunOptions$Outputs_Sim
+
+
+ ## SNOW_MODULE________________________________________________________________________________
+ if (inherits(RunOptions, "CemaNeige") == TRUE) {
+ if ("all" %in% RunOptions$Outputs_Sim) {
+ IndOutputsCemaNeige <- as.integer(1:length(FortranOutputs$CN))
+ } else {
+ IndOutputsCemaNeige <- which(FortranOutputs$CN %in% RunOptions$Outputs_Sim)
+ }
+ CemaNeigeLayers <- list()
+ CemaNeigeStateEnd <- NULL
+ NameCemaNeigeLayers <- "CemaNeigeLayers"
+
+
+ ## Call_DLL_CemaNeige_________________________
+ for(iLayer in 1:NLayers) {
+ if (!IsHyst) {
+ StateStartCemaNeige <- RunOptions$IniStates[(7 + 20 + 40) + c(iLayer, iLayer+NLayers)]
+ } else {
+ StateStartCemaNeige <- RunOptions$IniStates[(7 + 20 + 40) + c(iLayer, iLayer+NLayers, iLayer+2*NLayers, iLayer+3*NLayers)]
}
- if (Param[4L] < Param_X4_threshold) {
- warning(sprintf("Param[4] (X4: unit hydrograph time constant [d]) < %.2f\n X4 set to %.2f", Param_X4_threshold, Param_X4_threshold))
- Param[4L] <- Param_X4_threshold
- }
-
- ##Input_data_preparation
- if(identical(RunOptions$IndPeriod_WarmUp,as.integer(0))){ RunOptions$IndPeriod_WarmUp <- NULL; }
- IndPeriod1 <- c(RunOptions$IndPeriod_WarmUp,RunOptions$IndPeriod_Run);
- LInputSeries <- as.integer(length(IndPeriod1))
- IndPeriod2 <- (length(RunOptions$IndPeriod_WarmUp)+1):LInputSeries;
- ParamCemaNeige <- Param[(length(Param)-1-2*as.integer(IsHyst)):length(Param)];
- NParamMod <- as.integer(length(Param)-(2+2*as.integer(IsHyst)));
- ParamMod <- Param[1:NParamMod];
- NLayers <- length(InputsModel$LayerPrecip);
- NStatesMod <- as.integer(length(RunOptions$IniStates)-NStates*NLayers);
- ExportDatesR <- "DatesR" %in% RunOptions$Outputs_Sim;
- ExportStateEnd <- "StateEnd" %in% RunOptions$Outputs_Sim;
-
-
- ##SNOW_MODULE________________________________________________________________________________##
- if(inherits(RunOptions,"CemaNeige")==TRUE){
- if("all" %in% RunOptions$Outputs_Sim){ IndOutputsCemaNeige <- as.integer(1:length(FortranOutputs$CN));
- } else { IndOutputsCemaNeige <- which(FortranOutputs$CN %in% RunOptions$Outputs_Sim); }
- CemaNeigeLayers <- list(); CemaNeigeStateEnd <- NULL; NameCemaNeigeLayers <- "CemaNeigeLayers";
-
+ RESULTS <- .Fortran("frun_cemaneige", PACKAGE="airGR",
+ ## inputs
+ LInputs = LInputSeries, ### length of input and output series
+ InputsPrecip = InputsModel$LayerPrecip[[iLayer]][IndPeriod1], ### input series of total precipitation [mm/d]
+ InputsFracSolidPrecip = InputsModel$LayerFracSolidPrecip[[iLayer]][IndPeriod1], ### input series of fraction of solid precipitation [0-1]
+ InputsTemp = InputsModel$LayerTemp[[iLayer]][IndPeriod1], ### input series of air mean temperature [degC]
+ MeanAnSolidPrecip = RunOptions$MeanAnSolidPrecip[iLayer], ### value of annual mean solid precip [mm/y]
+ NParam = as.integer(NParamCN), ### number of model parameters = 2 or 4
+ Param = as.double(ParamCemaNeige), ### parameter set
+ NStates = as.integer(NStates), ### number of state variables used for model initialising = 4
+ StateStart = StateStartCemaNeige, ### state variables used when the model run starts
+ IsHyst = as.integer(IsHyst), ### use of hysteresis
+ NOutputs = as.integer(length(IndOutputsCemaNeige)), ### number of output series
+ IndOutputs = IndOutputsCemaNeige, ### indices of output series
+ ## outputs
+ Outputs = matrix(as.double(-999.999), nrow = LInputSeries, ncol = length(IndOutputsCemaNeige)), ### output series [mm]
+ StateEnd = rep(as.double(-999.999), as.integer(NStates)) ### state variables at the end of the model run
+ )
+ RESULTS$Outputs[ round(RESULTS$Outputs , 3) == -999.999] <- NA
+ RESULTS$StateEnd[round(RESULTS$StateEnd, 3) == -999.999] <- NA
- ##Call_DLL_CemaNeige_________________________
- for(iLayer in 1:NLayers){
- if (!IsHyst) {
- StateStartCemaNeige <- RunOptions$IniStates[(7 + 20 + 40) + c(iLayer, iLayer+NLayers)]
- } else {
- StateStartCemaNeige <- RunOptions$IniStates[(7 + 20 + 40) + c(iLayer, iLayer+NLayers, iLayer+2*NLayers, iLayer+3*NLayers)]
+ ## Data_storage
+ CemaNeigeLayers[[iLayer]] <- lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2, i])
+ names(CemaNeigeLayers[[iLayer]]) <- FortranOutputs$CN[IndOutputsCemaNeige]
+ IndPliqAndMelt <- which(names(CemaNeigeLayers[[iLayer]]) == "PliqAndMelt")
+ if (iLayer == 1) {
+ CatchMeltAndPliq <- RESULTS$Outputs[, IndPliqAndMelt] / NLayers
}
- RESULTS <- .Fortran("frun_cemaneige",PACKAGE="airGR",
- ##inputs
- LInputs=LInputSeries, ### length of input and output series
- InputsPrecip=InputsModel$LayerPrecip[[iLayer]][IndPeriod1], ### input series of total precipitation [mm/d]
- InputsFracSolidPrecip=InputsModel$LayerFracSolidPrecip[[iLayer]][IndPeriod1], ### input series of fraction of solid precipitation [0-1]
- InputsTemp=InputsModel$LayerTemp[[iLayer]][IndPeriod1], ### input series of air mean temperature [degC]
- MeanAnSolidPrecip=RunOptions$MeanAnSolidPrecip[iLayer], ### value of annual mean solid precip [mm/y]
- NParam=as.integer(NParamCN), ### number of model parameters = 2 or 4
- Param=as.double(ParamCemaNeige), ### parameter set
- NStates=as.integer(NStates), ### number of state variables used for model initialising = 4
- StateStart=StateStartCemaNeige, ### state variables used when the model run starts
- IsHyst = as.integer(IsHyst), ### use of hysteresis
- NOutputs=as.integer(length(IndOutputsCemaNeige)), ### number of output series
- IndOutputs=IndOutputsCemaNeige, ### indices of output series
- ##outputs
- Outputs=matrix(as.double(-999.999),nrow=LInputSeries,ncol=length(IndOutputsCemaNeige)), ### output series [mm]
- StateEnd=rep(as.double(-999.999),as.integer(NStates)) ### state variables at the end of the model run
- )
- RESULTS$Outputs[ round(RESULTS$Outputs ,3)==(-999.999)] <- NA;
- RESULTS$StateEnd[round(RESULTS$StateEnd,3)==(-999.999)] <- NA;
-
- ##Data_storage
- CemaNeigeLayers[[iLayer]] <- lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2,i]);
- names(CemaNeigeLayers[[iLayer]]) <- FortranOutputs$CN[IndOutputsCemaNeige];
- IndPliqAndMelt <- which(names(CemaNeigeLayers[[iLayer]]) == "PliqAndMelt");
- if(iLayer==1){ CatchMeltAndPliq <- RESULTS$Outputs[,IndPliqAndMelt]/NLayers; }
- if(iLayer >1){ CatchMeltAndPliq <- CatchMeltAndPliq + RESULTS$Outputs[,IndPliqAndMelt]/NLayers; }
- if(ExportStateEnd){ CemaNeigeStateEnd <- c(CemaNeigeStateEnd,RESULTS$StateEnd); }
- rm(RESULTS);
- } ###ENDFOR_iLayer
- names(CemaNeigeLayers) <- sprintf("Layer%02i", seq_len(NLayers))
- } ###ENDIF_RunSnowModule
- if(inherits(RunOptions,"CemaNeige")==FALSE){
- CemaNeigeLayers <- list(); CemaNeigeStateEnd <- NULL; NameCemaNeigeLayers <- NULL;
- CatchMeltAndPliq <- InputsModel$Precip[IndPeriod1]; }
-
-
-
- ##MODEL______________________________________________________________________________________##
- if("all" %in% RunOptions$Outputs_Sim){ IndOutputsMod <- as.integer(1:length(FortranOutputs$GR));
- } else { IndOutputsMod <- which(FortranOutputs$GR %in% RunOptions$Outputs_Sim); }
-
- ##Use_of_IniResLevels
- if(!is.null(RunOptions$IniResLevels)){
- RunOptions$IniStates[1] <- RunOptions$IniResLevels[1]*ParamMod[1]; ### production store level (mm)
- RunOptions$IniStates[2] <- RunOptions$IniResLevels[2]*ParamMod[3]; ### routing store level (mm)
+ if (iLayer > 1) {
+ CatchMeltAndPliq <- CatchMeltAndPliq + RESULTS$Outputs[, IndPliqAndMelt] / NLayers
}
-
- ##Call_fortan
- RESULTS <- .Fortran("frun_gr5j",PACKAGE="airGR",
- ##inputs
- LInputs=LInputSeries, ### length of input and output series
- InputsPrecip=CatchMeltAndPliq, ### input series of total precipitation [mm/d]
- InputsPE=InputsModel$PotEvap[IndPeriod1], ### input series potential evapotranspiration [mm/d]
- NParam=NParamMod, ### number of model parameter
- Param=ParamMod, ### parameter set
- NStates=NStatesMod, ### number of state variables used for model initialising
- StateStart=RunOptions$IniStates[1:NStatesMod], ### state variables used when the model run starts
- NOutputs=as.integer(length(IndOutputsMod)), ### number of output series
- IndOutputs=IndOutputsMod, ### indices of output series
- ##outputs
- Outputs=matrix(as.double(-999.999),nrow=LInputSeries,ncol=length(IndOutputsMod)), ### output series [mm]
- StateEnd=rep(as.double(-999.999),NStatesMod) ### state variables at the end of the model run
- )
- RESULTS$Outputs[ round(RESULTS$Outputs ,3)==(-999.999)] <- NA;
- RESULTS$StateEnd[round(RESULTS$StateEnd,3)==(-999.999)] <- NA;
if (ExportStateEnd) {
- RESULTS$StateEnd[-3L] <- ifelse(RESULTS$StateEnd[-3L] < 0, 0, RESULTS$StateEnd[-3L]) ### remove negative values except for the ExpStore location
- idNStates <- seq_len(NStates*NLayers) %% NStates
- RESULTS$StateEnd <- CreateIniStates(FUN_MOD = RunModel_CemaNeigeGR5J, InputsModel = InputsModel, IsHyst = IsHyst,
- ProdStore = RESULTS$StateEnd[1L], RoutStore = RESULTS$StateEnd[2L], ExpStore = NULL,
- UH1 = NULL, UH2 = RESULTS$StateEnd[(1:40)+(7+20)],
- GCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 1]],
- eTGCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 2]],
- GthrCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 3]],
- GlocmaxCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 0]],
- verbose = FALSE)
+ CemaNeigeStateEnd <- c(CemaNeigeStateEnd, RESULTS$StateEnd)
}
-
- if(inherits(RunOptions,"CemaNeige")==TRUE & "Precip" %in% RunOptions$Outputs_Sim){ RESULTS$Outputs[,which(FortranOutputs$GR[IndOutputsMod]=="Precip")] <- InputsModel$Precip[IndPeriod1]; }
-
- ##Output_data_preparation
- ##OutputsModel_only
- if(ExportDatesR==FALSE & ExportStateEnd==FALSE){
- OutputsModel <- c( lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2,i]),
- list(CemaNeigeLayers) );
- names(OutputsModel) <- c(FortranOutputs$GR[IndOutputsMod],NameCemaNeigeLayers); }
- ##DatesR_and_OutputsModel_only
- if(ExportDatesR==TRUE & ExportStateEnd==FALSE){
- OutputsModel <- c( list(InputsModel$DatesR[RunOptions$IndPeriod_Run]),
- lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2,i]),
- list(CemaNeigeLayers) );
- names(OutputsModel) <- c("DatesR",FortranOutputs$GR[IndOutputsMod],NameCemaNeigeLayers); }
- ##OutputsModel_and_SateEnd_only
- if(ExportDatesR==FALSE & ExportStateEnd==TRUE){
- OutputsModel <- c( lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2,i]),
- list(CemaNeigeLayers),
- list(RESULTS$StateEnd) );
- names(OutputsModel) <- c(FortranOutputs$GR[IndOutputsMod],NameCemaNeigeLayers,"StateEnd"); }
- ##DatesR_and_OutputsModel_and_SateEnd
- if(ExportDatesR==TRUE & ExportStateEnd==TRUE){
- OutputsModel <- c( list(InputsModel$DatesR[RunOptions$IndPeriod_Run]),
- lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2,i]),
- list(CemaNeigeLayers),
- list(RESULTS$StateEnd) );
- names(OutputsModel) <- c("DatesR",FortranOutputs$GR[IndOutputsMod],NameCemaNeigeLayers,"StateEnd"); }
-
- ##End
- rm(RESULTS);
- class(OutputsModel) <- c("OutputsModel","daily","GR","CemaNeige");
- if(IsHyst) {
- class(OutputsModel) <- c(class(OutputsModel), "hysteresis")
- }
- return(OutputsModel);
-
+ rm(RESULTS)
+ } ### ENDFOR_iLayer
+ names(CemaNeigeLayers) <- sprintf("Layer%02i", seq_len(NLayers))
+ } ### ENDIF_RunSnowModule
+ if (inherits(RunOptions, "CemaNeige") == FALSE) {
+ CemaNeigeLayers <- list()
+ CemaNeigeStateEnd <- NULL
+ NameCemaNeigeLayers <- NULL
+ CatchMeltAndPliq <- InputsModel$Precip[IndPeriod1]
+ }
+
+
+
+ ## MODEL______________________________________________________________________________________
+ if ("all" %in% RunOptions$Outputs_Sim) {
+ IndOutputsMod <- as.integer(1:length(FortranOutputs$GR))
+ } else {
+ IndOutputsMod <- which(FortranOutputs$GR %in% RunOptions$Outputs_Sim)
+ }
+
+ ## Use_of_IniResLevels
+ if (!is.null(RunOptions$IniResLevels)) {
+ RunOptions$IniStates[1] <- RunOptions$IniResLevels[1] * ParamMod[1] ### production store level (mm)
+ RunOptions$IniStates[2] <- RunOptions$IniResLevels[2] * ParamMod[3] ### routing store level (mm)
+ }
+
+ ## Call_fortan
+ RESULTS <- .Fortran("frun_gr5j", PACKAGE = "airGR",
+ ## inputs
+ LInputs = LInputSeries, ### length of input and output series
+ InputsPrecip = CatchMeltAndPliq, ### input series of total precipitation [mm/d]
+ InputsPE = InputsModel$PotEvap[IndPeriod1], ### input series potential evapotranspiration [mm/d]
+ NParam = NParamMod, ### number of model parameter
+ Param = ParamMod, ### parameter set
+ NStates = NStatesMod, ### number of state variables used for model initialising
+ StateStart = RunOptions$IniStates[1:NStatesMod], ### state variables used when the model run starts
+ NOutputs = as.integer(length(IndOutputsMod)), ### number of output series
+ IndOutputs = IndOutputsMod, ### indices of output series
+ ## outputs
+ Outputs = matrix(as.double(-999.999), nrow = LInputSeries, ncol = length(IndOutputsMod)), ### output series [mm]
+ StateEnd = rep(as.double(-999.999), NStatesMod) ### state variables at the end of the model run
+ )
+ RESULTS$Outputs[ round(RESULTS$Outputs , 3) == -999.999] <- NA
+ RESULTS$StateEnd[round(RESULTS$StateEnd, 3) == -999.999] <- NA
+ if (ExportStateEnd) {
+ RESULTS$StateEnd[-3L] <- ifelse(RESULTS$StateEnd[-3L] < 0, 0, RESULTS$StateEnd[-3L]) ### remove negative values except for the ExpStore location
+ idNStates <- seq_len(NStates*NLayers) %% NStates
+ RESULTS$StateEnd <- CreateIniStates(FUN_MOD = RunModel_CemaNeigeGR5J, InputsModel = InputsModel, IsHyst = IsHyst,
+ ProdStore = RESULTS$StateEnd[1L], RoutStore = RESULTS$StateEnd[2L], ExpStore = NULL,
+ UH1 = NULL, UH2 = RESULTS$StateEnd[(1:40)+(7+20)],
+ GCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 1]],
+ eTGCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 2]],
+ GthrCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 3]],
+ GlocmaxCemaNeigeLayers = CemaNeigeStateEnd[seq_len(NStates*NLayers)[idNStates == 0]],
+ verbose = FALSE)
+ }
+
+ if (inherits(RunOptions, "CemaNeige") == TRUE & "Precip" %in% RunOptions$Outputs_Sim) {
+ RESULTS$Outputs[,which(FortranOutputs$GR[IndOutputsMod] == "Precip")] <- InputsModel$Precip[IndPeriod1]
+ }
+
+ ## Output_data_preparation
+ ## OutputsModel_only
+ if (ExportDatesR == FALSE & ExportStateEnd == FALSE) {
+ OutputsModel <- c(lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2, i]),
+ list(CemaNeigeLayers))
+ names(OutputsModel) <- c(FortranOutputs$GR[IndOutputsMod], NameCemaNeigeLayers)
+ }
+ ## DatesR_and_OutputsModel_only
+ if (ExportDatesR == TRUE & ExportStateEnd == FALSE) {
+ OutputsModel <- c(list(InputsModel$DatesR[RunOptions$IndPeriod_Run]),
+ lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2, i]),
+ list(CemaNeigeLayers))
+ names(OutputsModel) <- c("DatesR", FortranOutputs$GR[IndOutputsMod], NameCemaNeigeLayers)
+ }
+ ## OutputsModel_and_SateEnd_only
+ if (ExportDatesR == FALSE & ExportStateEnd == TRUE) {
+ OutputsModel <- c(lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2, i]),
+ list(CemaNeigeLayers),
+ list(RESULTS$StateEnd))
+ names(OutputsModel) <- c(FortranOutputs$GR[IndOutputsMod], NameCemaNeigeLayers, "StateEnd")
+ }
+ ## DatesR_and_OutputsModel_and_SateEnd
+ if (ExportDatesR == TRUE & ExportStateEnd == TRUE) {
+ OutputsModel <- c(list(InputsModel$DatesR[RunOptions$IndPeriod_Run]),
+ lapply(seq_len(RESULTS$NOutputs), function(i) RESULTS$Outputs[IndPeriod2, i]),
+ list(CemaNeigeLayers),
+ list(RESULTS$StateEnd))
+ names(OutputsModel) <- c("DatesR", FortranOutputs$GR[IndOutputsMod], NameCemaNeigeLayers, "StateEnd")
+ }
+
+ ## End
+ rm(RESULTS)
+ class(OutputsModel) <- c("OutputsModel", "daily", "GR", "CemaNeige")
+ if (IsHyst) {
+ class(OutputsModel) <- c(class(OutputsModel), "hysteresis")
+ }
+ return(OutputsModel)
+
}