From c5c9cc5b80524ca4bf2863378721e9fe5d76047e Mon Sep 17 00:00:00 2001
From: Delaigue Olivier <olivier.delaigue@irstea.priv>
Date: Mon, 1 Apr 2019 09:15:15 +0200
Subject: [PATCH] v1.2.12.16 DOC: minor syntax revisions in many docs

---
 DESCRIPTION                   |  2 +-
 NEWS.rmd                      |  2 +-
 man/CreateCalibOptions.Rd     | 13 +++----
 man/CreateRunOptions.Rd       | 11 +++---
 man/RunModel_CemaNeigeGR5J.Rd | 70 +++++++++++++++++------------------
 man/SeriesAggreg.Rd           |  6 +--
 man/TransfoParam.Rd           |  8 +---
 man/airGR.Rd                  | 45 +++++++++++-----------
 8 files changed, 75 insertions(+), 82 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 49092a93..0d2dcb6a 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: airGR
 Type: Package
 Title: Suite of GR Hydrological Models for Precipitation-Runoff Modelling
-Version: 1.2.12.15
+Version: 1.2.12.16
 Date: 2019-04-01
 Authors@R: c(
   person("Laurent", "Coron", role = c("aut", "trl"), comment = c(ORCID = "0000-0002-1503-6204")),
diff --git a/NEWS.rmd b/NEWS.rmd
index 3d117ae3..d5e8270f 100644
--- a/NEWS.rmd
+++ b/NEWS.rmd
@@ -13,7 +13,7 @@ output:
 
 
 
-### 1.2.12.15 Release Notes (2019-04-01) 
+### 1.2.12.16 Release Notes (2019-04-01) 
 
 
 
diff --git a/man/CreateCalibOptions.Rd b/man/CreateCalibOptions.Rd
index be9b1c23..c4a446d6 100644
--- a/man/CreateCalibOptions.Rd
+++ b/man/CreateCalibOptions.Rd
@@ -76,13 +76,12 @@ Creation of the \emph{CalibOptions} object required by the \code{Calibration*} f
 
 \details{
 Users wanting to use \code{FUN_MOD}, \code{FUN_CALIB} or \code{FUN_TRANSFO} functions that are not included in 
-the package must create their own \code{CalibOptions} object accordingly.
+the package must create their own \code{CalibOptions} object accordingly. \cr
 
-##### CemaNeige version #####
-
-If \code{IsHyst = FALSE}, the original CemaNeige version from Valéry et al. (2014) is used.  \cr
-If \code{IsHyst = TRUE}, the CemaNeige version from Riboust et al. (2019) is used. Compared to the original version, this version of CemaNeige needs two more parameters and it includes a representation of the hysteretic relationship between the Snow Cover Area (SCA) and the Snow Water Equivalent (SWE) in the catchment. The hysteresis included in airGR is the Modified Linear hysteresis (LH*); it is represented on panel b) of Fig. 3 in Riboust et al. (2019). Riboust et al. (2019) advise to use the LH* version of CemaNeige with parameters calibrated using an objective function combining 75 \% of KGE calculated on discharge simulated from a rainfall-runoff model compared to observed discharge and 5 \% of KGE calculated on SCA on 5 CemaNeige elevation bands compared to satellite (e.g. MODIS) SCA (see Eq. (18), Table 3 and Fig. 6). Riboust et al. (2019)'s tests were realized with GR4J as the chosen rainfall-runoff model. \cr \cr
+## ---- CemaNeige version
 
+If \code{IsHyst = FALSE}, the original CemaNeige version from Valéry et al. (2014) is used. \cr
+If \code{IsHyst = TRUE}, the CemaNeige version from Riboust et al. (2019) is used. Compared to the original version, this version of CemaNeige needs two more parameters and it includes a representation of the hysteretic relationship between the Snow Cover Area (SCA) and the Snow Water Equivalent (SWE) in the catchment. The hysteresis included in airGR is the Modified Linear hysteresis (LH*); it is represented on panel b) of Fig. 3 in Riboust et al. (2019). Riboust et al. (2019) advise to use the LH* version of CemaNeige with parameters calibrated using an objective function combining 75 \% of KGE calculated on discharge simulated from a rainfall-runoff model compared to observed discharge and 5 \% of KGE calculated on SCA on 5 CemaNeige elevation bands compared to satellite (e.g. MODIS) SCA (see Eq. (18), Table 3 and Fig. 6). Riboust et al. (2019)'s tests were realized with GR4J as the chosen rainfall-runoff model. \cr
 }
 
 
@@ -134,16 +133,14 @@ OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsMode
 InputsCrit  <- CreateInputsCrit(FUN_CRIT = ErrorCrit_KGE, InputsModel = InputsModel, 
                                 RunOptions = RunOptions, obs = BasinObs$Qmm[Ind_Run], varObs = "Q")
 OutputsCrit <- ErrorCrit_KGE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
-
 }
 
 
 \author{
-Laurent Coron
+Laurent Coron, Olivier Delaigue, Guillaume Thirel
 }
 
 
 \seealso{
 \code{\link{Calibration}}, \code{\link{RunModel}}
 }
-
diff --git a/man/CreateRunOptions.Rd b/man/CreateRunOptions.Rd
index ad565f8f..cce6f59d 100644
--- a/man/CreateRunOptions.Rd
+++ b/man/CreateRunOptions.Rd
@@ -73,7 +73,7 @@ Creation of the RunOptions object required to the \code{RunModel*} functions.
 Users wanting to use \code{FUN_MOD} functions that are not included in 
 the package must create their own \code{RunOptions} object accordingly.
 
-##### Initialisation options #####
+## ---- Initialisation options
 
 The model initialisation options can either be set to a default configuration or be defined by the user.
 
@@ -108,11 +108,10 @@ However, it is also possible to perform a long-term initialisation if other indi
 }
 }
 
-##### CemaNeige version #####
+## ---- CemaNeige version
 
 If \code{IsHyst = FALSE}, the original CemaNeige version from Valéry et al. (2014) is used.  \cr
-If \code{IsHyst = TRUE}, the CemaNeige version from Riboust et al. (2019) is used. Compared to the original version, this version of CemaNeige needs two more parameters and it includes a representation of the hysteretic relationship between the Snow Cover Area (SCA) and the Snow Water Equivalent (SWE) in the catchment. The hysteresis included in airGR is the Modified Linear hysteresis (LH*); it is represented on panel b) of Fig. 3 in Riboust et al. (2019). Riboust et al. (2019) advise to use the LH* version of CemaNeige with parameters calibrated using an objective function combining 75 \% of KGE calculated on discharge simulated from a rainfall-runoff model compared to observed discharge and 5 \% of KGE calculated on SCA on 5 CemaNeige elevation bands compared to satellite (e.g. MODIS) SCA (see Eq. (18), Table 3 and Fig. 6). Riboust et al. (2019)'s tests were realized with GR4J as the chosen rainfall-runoff model. \cr \cr
-
+If \code{IsHyst = TRUE}, the CemaNeige version from Riboust et al. (2019) is used. Compared to the original version, this version of CemaNeige needs two more parameters and it includes a representation of the hysteretic relationship between the Snow Cover Area (SCA) and the Snow Water Equivalent (SWE) in the catchment. The hysteresis included in airGR is the Modified Linear hysteresis (LH*); it is represented on panel b) of Fig. 3 in Riboust et al. (2019). Riboust et al. (2019) advise to use the LH* version of CemaNeige with parameters calibrated using an objective function combining 75 \% of KGE calculated on discharge simulated from a rainfall-runoff model compared to observed discharge and 5 \% of KGE calculated on SCA on 5 CemaNeige elevation bands compared to satellite (e.g. MODIS) SCA (see Eq. (18), Table 3 and Fig. 6). Riboust et al. (2019)'s tests were realized with GR4J as the chosen rainfall-runoff model. \cr
 }
 
 
@@ -157,6 +156,6 @@ Laurent Coron, Olivier Delaigue, Guillaume Thirel
 
 
 \seealso{
-\code{\link{RunModel}}, \code{\link{CreateInputsModel}}, \code{\link{CreateInputsCrit}}, \code{\link{CreateCalibOptions}}, \code{\link{CreateIniStates}}
+\code{\link{RunModel}}, \code{\link{CreateInputsModel}}, \code{\link{CreateInputsCrit}},
+\code{\link{CreateCalibOptions}}, \code{\link{CreateIniStates}}
 }
-
diff --git a/man/RunModel_CemaNeigeGR5J.Rd b/man/RunModel_CemaNeigeGR5J.Rd
index 5d4beb04..7e8bd17a 100644
--- a/man/RunModel_CemaNeigeGR5J.Rd
+++ b/man/RunModel_CemaNeigeGR5J.Rd
@@ -35,41 +35,41 @@ CemaNeige X4 \tab (optional) percentage (between 0 and 1) of annual snowfall def
 
 \value{
 [list] list containing the function outputs organised as follows:                                         
-         \tabular{ll}{                                                                                         
-         \emph{$DatesR  }          \tab [POSIXlt] series of dates                                                     \cr
-         \emph{$PotEvap }          \tab [numeric] series of input potential evapotranspiration [mm/d]                 \cr
-         \emph{$Precip  }          \tab [numeric] series of input total precipitation [mm/d]                          \cr
-         \emph{$Prod    }          \tab [numeric] series of production store level [mm]                        \cr
-         \emph{$Pn      }          \tab [numeric] series of net rainfall [mm/d]                         			  \cr
-         \emph{$Ps      }          \tab [numeric] series of the part of Pn filling the production store [mm/d]        \cr
-         \emph{$AE      }          \tab [numeric] series of actual evapotranspiration [mm/d]                          \cr
-         \emph{$Perc    }          \tab [numeric] series of percolation (PERC) [mm/d]                                 \cr
-         \emph{$PR      }          \tab [numeric] series of PR=Pn-Ps+Perc [mm/d]                                      \cr
-         \emph{$Q9      }          \tab [numeric] series of UH1 outflow (Q9) [mm/d]                                   \cr
-         \emph{$Q1      }          \tab [numeric] series of UH2 outflow (Q1) [mm/d]                                   \cr
-         \emph{$Rout    }          \tab [numeric] series of routing store level [mm]                           \cr
-         \emph{$Exch    }          \tab [numeric] series of potential semi-exchange between catchments [mm/d]         \cr
-         \emph{$AExch1  }          \tab [numeric] series of actual exchange between catchments for branch 1 [mm/d]    \cr
-         \emph{$AExch2  }          \tab [numeric] series of actual exchange between catchments for branch 2 [mm/d]    \cr
-         \emph{$AExch   }          \tab [numeric] series of actual exchange between catchments (1+2) [mm/d]           \cr
-         \emph{$QR      }          \tab [numeric] series of routing store outflow (QR) [mm/d]                         \cr
-         \emph{$QD      }          \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/d]           \cr
-         \emph{$Qsim    }          \tab [numeric] series of simulated discharge [mm/d]                                               \cr
-         \emph{$CemaNeigeLayers}   \tab [list] list of CemaNeige outputs (1 list per layer)                           \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Pliq         }   \tab [numeric] series of liquid precip. [mm/d]                          \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Psol         }   \tab [numeric] series of solid precip. [mm/d]                           \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$SnowPack     }   \tab [numeric] series of snow pack [mm]                                 \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$ThermalState }   \tab [numeric] series of snow pack thermal state [°C]                 \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Gratio       }   \tab [numeric] series of Gratio [0-1]                                   \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$PotMelt      }   \tab [numeric] series of potential snow melt [mm/d]                     \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Melt         }   \tab [numeric] series of actual snow melt [mm/d]                        \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$PliqAndMelt  }   \tab [numeric] series of liquid precip. + actual snow melt [mm/d]       \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Temp         }   \tab [numeric] series of air temperature [°C] \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Gthreshold   }   \tab [numeric] series of melt threshold [mm] \cr
-         \emph{$CemaNeigeLayers[[iLayer]]$Glocalmax    }   \tab [numeric] series of local melt threshold for hysteresis [mm] \cr
-         \emph{$StateEnd}                                  \tab [numeric] states at the end of the run: \cr\tab store & unit hydrographs levels [mm], CemaNeige states [mm & °C], \cr\tab see \code{\link{CreateIniStates}} for more details \cr
-         }                                                                                                     
-         (refer to the provided references or to the package source code for further details on these model outputs)
+  \tabular{ll}{                                                                                         
+    \emph{$DatesR  }          \tab [POSIXlt] series of dates                                                     \cr
+    \emph{$PotEvap }          \tab [numeric] series of input potential evapotranspiration [mm/d]                 \cr
+    \emph{$Precip  }          \tab [numeric] series of input total precipitation [mm/d]                          \cr
+    \emph{$Prod    }          \tab [numeric] series of production store level [mm]                               \cr
+    \emph{$Pn      }          \tab [numeric] series of net rainfall [mm/d]                         			         \cr
+    \emph{$Ps      }          \tab [numeric] series of the part of Pn filling the production store [mm/d]        \cr
+    \emph{$AE      }          \tab [numeric] series of actual evapotranspiration [mm/d]                          \cr
+    \emph{$Perc    }          \tab [numeric] series of percolation (PERC) [mm/d]                                 \cr
+    \emph{$PR      }          \tab [numeric] series of PR=Pn-Ps+Perc [mm/d]                                      \cr
+    \emph{$Q9      }          \tab [numeric] series of UH1 outflow (Q9) [mm/d]                                   \cr
+    \emph{$Q1      }          \tab [numeric] series of UH2 outflow (Q1) [mm/d]                                   \cr
+    \emph{$Rout    }          \tab [numeric] series of routing store level [mm]                                  \cr
+    \emph{$Exch    }          \tab [numeric] series of potential semi-exchange between catchments [mm/d]         \cr
+    \emph{$AExch1  }          \tab [numeric] series of actual exchange between catchments for branch 1 [mm/d]    \cr
+    \emph{$AExch2  }          \tab [numeric] series of actual exchange between catchments for branch 2 [mm/d]    \cr
+    \emph{$AExch   }          \tab [numeric] series of actual exchange between catchments (1+2) [mm/d]           \cr
+    \emph{$QR      }          \tab [numeric] series of routing store outflow (QR) [mm/d]                         \cr
+    \emph{$QD      }          \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/d]           \cr
+    \emph{$Qsim    }          \tab [numeric] series of simulated discharge [mm/d]                                \cr
+    \emph{$CemaNeigeLayers}   \tab [list] list of CemaNeige outputs (1 list per layer)                           \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Pliq         } \tab [numeric] series of liquid precip. [mm/d]                    \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Psol         } \tab [numeric] series of solid precip. [mm/d]                     \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$SnowPack     } \tab [numeric] series of snow pack [mm]                           \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$ThermalState } \tab [numeric] series of snow pack thermal state [°C]             \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Gratio       } \tab [numeric] series of Gratio [0-1]                             \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$PotMelt      } \tab [numeric] series of potential snow melt [mm/d]               \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Melt         } \tab [numeric] series of actual snow melt [mm/d]                  \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$PliqAndMelt  } \tab [numeric] series of liquid precip. + actual snow melt [mm/d] \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Temp         } \tab [numeric] series of air temperature [°C]                     \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Gthreshold   } \tab [numeric] series of melt threshold [mm]                      \cr
+    \emph{$CemaNeigeLayers[[iLayer]]$Glocalmax    } \tab [numeric] series of local melt threshold for hysteresis [mm] \cr
+    \emph{$StateEnd}                                \tab [numeric] states at the end of the run: \cr\tab store & unit hydrographs levels [mm], CemaNeige states [mm & °C], \cr\tab see \code{\link{CreateIniStates}} for more details                                 \cr
+  }
+  (refer to the provided references or to the package source code for further details on these model outputs)
 }
 
 
diff --git a/man/SeriesAggreg.Rd b/man/SeriesAggreg.Rd
index f85c512d..3eb8dde6 100644
--- a/man/SeriesAggreg.Rd
+++ b/man/SeriesAggreg.Rd
@@ -37,9 +37,9 @@ SeriesAggreg(TabSeries, TimeFormat, NewTimeFormat, ConvertFun,
 \description{
 Conversion of time series to another time step (aggregation only). \cr
 Warning : on the aggregated outputs, the dates correspond to the beginning of the time step \cr
-(e.g. for daily time-series 01/03/2005 00:00 = value for period 01/03/2005 00:00 - 01/03/2005 23:59) \cr
-(e.g. for monthly time-series 01/03/2005 00:00 = value for period 01/03/2005 00:00 - 31/03/2005 23:59) \cr
-(e.g. for yearly time-series 01/03/2005 00:00 = value for period 01/03/2005 00:00 - 28/02/2006 23:59)
+(e.g. for daily time-series 2005-03-01 00:00 = value for period 2005-03-01 00:00 - 2005-03-01 23:59) \cr
+(e.g. for monthly time-series 2005-03-01 00:00 = value for period 2005-03-01 00:00 - 2005-03-31 23:59) \cr
+(e.g. for yearly time-series 2005-03-01 00:00 = value for period 2005-03-01 00:00 - 2006-02-28 23:59)
 }
 
 
diff --git a/man/TransfoParam.Rd b/man/TransfoParam.Rd
index e3c70c7c..df754ac7 100644
--- a/man/TransfoParam.Rd
+++ b/man/TransfoParam.Rd
@@ -52,8 +52,7 @@ Function which transforms model parameters using the provided function (from raw
 \examples{
 library(airGR)
 
-
-#### generic function
+## ---- generic function
 
 ## transformation Raw -> Transformed for the GR4J model
 Xraw  <- matrix(c(+221.41, -3.63,  +30.00, +1.37,
@@ -70,7 +69,7 @@ Xtran <- matrix(c(+3.60, -2.00, +3.40, -9.10,
 Xraw  <- TransfoParam(ParamIn = Xtran, Direction = "TR", FUN_TRANSFO = TransfoParam_GR4J)
 
 
-#### specific function
+## ---- specific function
 
 ## transformation Raw -> Transformed for the GR4J model
 Xraw  <- matrix(c(+221.41, -3.63,  +30.00, +1.37,
@@ -91,6 +90,3 @@ Xraw  <- TransfoParam_GR4J(ParamIn = Xtran, Direction = "TR")
 \author{
 Laurent Coron, Olivier Delaigue
 }
-
-
-
diff --git a/man/airGR.Rd b/man/airGR.Rd
index 9a5007b3..9266747c 100644
--- a/man/airGR.Rd
+++ b/man/airGR.Rd
@@ -4,10 +4,10 @@
 \encoding{UTF-8}
 \title{Suite of GR Hydrological Models for Precipitation-Runoff Modelling}
 \description{
-This package brings into R the hydrological modelling tools used at IRSTEA-Antony (HYCAR Research Unit, France), including rainfall-runoff models (\strong{GR4H}, \strong{GR4J}, \strong{GR5J}, \strong{GR6J}, \strong{GR2M}, \strong{GR1A}) and a snow accumulation and melt model (\strong{CemaNeige}). Each model core is coded in FORTRAN to ensure low computational time. The other package functions (i.e. mainly the calibration algorithm and the computation of the efficiency criteria) are coded in R. \cr
+This package brings into R the hydrological modelling tools used at IRSTEA-Antony (HYCAR Research Unit, France), including rainfall-runoff models (\strong{GR4H}, \strong{GR4J}, \strong{GR5J}, \strong{GR6J}, \strong{GR2M}, \strong{GR1A}) and a snow accumulation and melt model (\strong{CemaNeige}). Each model core is coded in FORTRAN to ensure low computational time. The other package functions (i.e. mainly the calibration algorithm and the computation of the efficiency criteria) are coded in R. \cr\cr
 
 
-##### Functions and objects #####
+## ---- Functions and objects
 
 The airGR package has been designed to fulfil two major requirements: facilitate the use by non-expert users and allow flexibility regarding the addition of external criteria, models or calibration algorithms. The names of the functions and their arguments were chosen to this end. 
 
@@ -16,37 +16,38 @@ The package is mostly based on three families of functions: \cr
 - the functions belonging to the \code{\link{ErrorCrit}} family require two arguments: \emph{InputsCrit} and \emph{OutputsModel}; please refer to help pages \code{\link{CreateInputsCrit}} and \code{\link{RunModel}} for further details and examples; \cr
 - the functions belonging to the \code{\link{Calibration}} family require four arguments: \emph{InputsModel}, \emph{RunOptions}, \emph{InputsCrit} and \emph{CalibOptions};  please refer to help pages \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateInputsCrit}} and \code{\link{CreateCalibOptions}} for further details and examples.
 
-In order to limit the risk of mis-use and increase the flexibility of these main functions, we imposed the structure of their arguments and defined their class. Most users will not need to worry about these imposed structures since functions are provided to prepare these arguments for them: \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateInputsCrit}}, \code{\link{CreateCalibOptions}}. However, advanced users wishing to supplement the package with their own models will need to comply with these imposed structures and refer to the package source codes to get all the specification requirements. \cr
+In order to limit the risk of mis-use and increase the flexibility of these main functions, we imposed the structure of their arguments and defined their class. Most users will not need to worry about these imposed structures since functions are provided to prepare these arguments for them: \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateInputsCrit}}, \code{\link{CreateCalibOptions}}. However, advanced users wishing to supplement the package with their own models will need to comply with these imposed structures and refer to the package source codes to get all the specification requirements. \cr\cr
 
 
-##### Models #####
+## ---- Models
 
 Six hydrological models and one snow melt and accumulation model are implemented in airGR. The snow model can also be used alone or with the daily hydrological models, and each hydrological model can either be used alone or together with the snow model. \cr
 These models can be called within airGR using the following functions: \cr 
-- \code{\link{RunModel_GR4H}}: four-parameter hourly lumped hydrological model (Mathevet, 2005) \cr
-- \code{\link{RunModel_GR4J}}: four-parameter daily lumped hydrological model (Perrin \emph{et al.}, 2003) \cr
-- \code{\link{RunModel_GR5J}}: five-parameter daily lumped hydrological model (Le Moine, 2008) \cr
-- \code{\link{RunModel_GR6J}}: six-parameter daily lumped hydrological model (Pushpalatha \emph{et al.}, 2011) \cr
-- \code{\link{RunModel_GR2M}}: two-parameter monthly lumped hydrological model (Mouelhi, 2003 ; Mouelhi \emph{et al.}, 2006a) \cr
-- \code{\link{RunModel_GR1A}}: one-parameter yearly lumped hydrological model (Mouelhi, 2003 ; Mouelhi \emph{et al.}, 2006b) \cr
-- \code{\link{RunModel_CemaNeige}}: two-parameter degree-day snow melt and accumulation daily model (Valéry \emph{et al.}, 2014) \cr
-- \code{\link{RunModel_CemaNeigeGR4J}}: combined use of GR4J and CemaNeige \cr
-- \code{\link{RunModel_CemaNeigeGR5J}}: combined use of GR5J and CemaNeige \cr
-- \code{\link{RunModel_CemaNeigeGR6J}}: combined use of GR6J and CemaNeige \cr
+  - \code{\link{RunModel_GR4H}}: four-parameter hourly lumped hydrological model (Mathevet, 2005) \cr
+  - \code{\link{RunModel_GR4J}}: four-parameter daily lumped hydrological model (Perrin \emph{et al.}, 2003) \cr
+  - \code{\link{RunModel_GR5J}}: five-parameter daily lumped hydrological model (Le Moine, 2008) \cr
+  - \code{\link{RunModel_GR6J}}: six-parameter daily lumped hydrological model (Pushpalatha \emph{et al.}, 2011) \cr
+  - \code{\link{RunModel_GR2M}}: two-parameter monthly lumped hydrological model (Mouelhi, 2003 ; Mouelhi \emph{et al.}, 2006a) \cr
+  - \code{\link{RunModel_GR1A}}: one-parameter yearly lumped hydrological model (Mouelhi, 2003 ; Mouelhi \emph{et al.}, 2006b) \cr
+  - \code{\link{RunModel_CemaNeige}}: two-parameter degree-day snow melt and accumulation daily model (Valéry \emph{et al.}, 2014) \cr
+  - \code{\link{RunModel_CemaNeigeGR4J}}: combined use of GR4J and CemaNeige \cr
+  - \code{\link{RunModel_CemaNeigeGR5J}}: combined use of GR5J and CemaNeige \cr
+  - \code{\link{RunModel_CemaNeigeGR6J}}: combined use of GR6J and CemaNeige \cr\cr
 
 
-##### How to get started #####
+## ---- How to get started
 
 To learn how to use the functions from the airGR package, it is recommended to follow the five steps described below: \cr
-1. refer to the help for \code{\link{RunModel_GR4J}} then run the provided example to assess how to make a simulation; \cr
-2. refer to the help for \code{\link{CreateInputsModel}} to understand how the inputs of a model are prepared/organised; \cr
-3. refer to the help for \code{\link{CreateRunOptions}} to understand how the run options of a model are parametrised/organised; \cr
-4. refer to the help for \code{\link{ErrorCrit_NSE}} and \code{\link{CreateInputsCrit}} to understand how the computation of an error criterion is prepared/made; \cr
-5. refer to the help for \code{\link{Calibration_Michel}}, run the provided example and then refer to the help for \code{\link{CreateCalibOptions}} to understand how a model calibration is prepared/made. \cr
+  1. refer to the help for \code{\link{RunModel_GR4J}} then run the provided example to assess how to make a simulation; \cr
+  2. refer to the help for \code{\link{CreateInputsModel}} to understand how the inputs of a model are prepared/organised; \cr
+  3. refer to the help for \code{\link{CreateRunOptions}} to understand how the run options of a model are parametrised/organised; \cr
+  4. refer to the help for \code{\link{ErrorCrit_NSE}} and \code{\link{CreateInputsCrit}} to understand how the computation of an error criterion is prepared/made; \cr
+  5. refer to the help for \code{\link{Calibration_Michel}}, run the provided example and then refer to the help for \code{\link{CreateCalibOptions}} to understand how a model calibration is prepared/made. \cr
 
-For more information and to get started with the package, you can refer to the vignette (\code{vignette("airGR")}) and go on the \href{https://webgr.irstea.fr/airGR-website}{airGR website}.
+For more information and to get started with the package, you can refer to the vignette (\code{vignette("airGR")}) and go on the \href{https://hydrogr.github.io/airGR/}{airGR website}. \cr\cr
 
-##### References #####
+
+## ---- References
 
 - Le Moine, N. (2008). Le bassin versant de surface vu par le souterrain : une voie d'amélioration des performances et du réalisme des modèles pluie-débit ?, PhD thesis (in French), UPMC - Cemagref Antony, Paris, France, 324 pp. \cr
 - Mathevet, T. (2005). Quels modèles pluie-débit globaux pour le pas de temps horaire ? Développement empirique et comparaison de modèles sur un large échantillon de bassins versants, PhD thesis (in French), ENGREF - Cemagref Antony, Paris, France, 463 pp. \cr
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