From e70b9ae348f4fe8a645dd0b8043ed141f15ae819 Mon Sep 17 00:00:00 2001
From: unknown <olivier.delaigue@ANPI1430.antony.irstea.priv>
Date: Mon, 26 Jun 2017 12:21:38 +0200
Subject: [PATCH] v1.0.9.6 CreateIniStates documentation updated

---
 DESCRIPTION             |  2 +-
 man/CreateIniStates.Rd  | 18 +++++++++---------
 man/CreateRunOptions.Rd |  2 +-
 3 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index ace8f6e8..8bd17dd6 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: airGR
 Type: Package
 Title: Suite of GR Hydrological Models for Precipitation-Runoff Modelling
-Version: 1.0.9.5
+Version: 1.0.9.6
 Date: 2017-06-26
 Authors@R: c(
   person("Laurent", "Coron", role = c("aut", "trl")),
diff --git a/man/CreateIniStates.Rd b/man/CreateIniStates.Rd
index f1426e76..4edaa15a 100644
--- a/man/CreateIniStates.Rd
+++ b/man/CreateIniStates.Rd
@@ -42,24 +42,24 @@ CreateIniStates(FUN_MOD, InputsModel,
 
 
 \value{
-[list] object of class \code{IniStates} containing the initial model internal states; it includes the following:
+[list] object of class \code{IniStates} containing the initial model internal states; it always includes the following:
          \tabular{ll}{
-         \emph{$Store          }  \tab  [numeric] list of store levels (always \emph{$Prod}, \emph{$Rout} and \emph{$Exp}) \cr
-         \emph{$UH             }  \tab  [numeric] list of unit hydrographs levels (always \emph{$UH1} and \emph{$UH2} \cr
-         \emph{$CemaNeigeLayers}  \tab  [numeric] list of CemaNeige variables (always \emph{$G} and \emph{$eTG})
+         \emph{$Store          }  \tab  [numeric] list of store levels (\emph{$Prod}, \emph{$Rout} and \emph{$Exp}) \cr
+         \emph{$UH             }  \tab  [numeric] list of unit hydrographs levels (\emph{$UH1} and \emph{$UH2}) \cr
+         \emph{$CemaNeigeLayers}  \tab  [numeric] list of CemaNeige variables (\emph{$G} and \emph{$eTG})
          }
 }
 
 
 \description{
-Creation of the IniStates object possibly required by the CreateRunOptions functions
+Creation of the \code{IniStates} object possibly required by the \code{\link{CreateRunOptions}} functions
 }
 
 \details{
-20 floats are required for UH1 and 40 floats are required for UH2 (repectivly 20*24 and 40*24 for the daily model GR4H). \cr
-NLayers floats are required for GCemaNeigeLayers and eTGCemaNeigeLayers. \cr
-The structure of the object of class \code{IniStates} returned is always the exactly same for all models(except for the unit hydrographs more longer with GR4H), even some states don't exist (e.g. \emph{$UH$UH1} for GR2M).  \cr
-If CemaNeige is not used , \emph{$CemaNeigeLayers$G} and \emph{$CemaNeigeLayers$eTG} are set to \code{NA}. \cr
+20 numeric values are required for UH1 and 40 numeric values are required for UH2 if GR4J, GR5J or GR6J are used (respectivly 20*24 and 40*24 for the daily model GR4H). \cr
+GCemaNeigeLayers and eTGCemaNeigeLayers require each numeric values as many as given in \code{\link{CreateInputsModel}} with the NLayersargument. \cr
+The structure of the object of class \code{IniStates} returned is always exactly the same for all models (except for the unit hydrographs levels that contain more values with GR4H), even if some states do nt exist (e.g. \emph{$UH$UH1} for GR2M).  \cr
+If CemaNeige is not used, \emph{$CemaNeigeLayers$G} and \emph{$CemaNeigeLayers$eTG} are set to \code{NA}. \cr
 
 Nota: the \code{StateEnd} objects from the outputs of \code{RunModel*} functions already respect the format given by the \code{CreateIniStates} function. 
 }
diff --git a/man/CreateRunOptions.Rd b/man/CreateRunOptions.Rd
index 59a52d7d..f113e377 100644
--- a/man/CreateRunOptions.Rd
+++ b/man/CreateRunOptions.Rd
@@ -73,7 +73,7 @@ The actual length of this warm-up might be shorter depending on data availabilit
 \itemize{
 \item \code{IndPeriod_WarmUp} can be used to specify the indices of the warm-up period (within the time series prepared in InputsModel). \cr
 - remark 1:	for most common cases, indices corresponding to one or several years preceding \code{IndPeriod_Run} are used (e.g. \code{IndPeriod_WarmUp = 1000:1365} and \code{IndPeriod_Run = 1366:5000)}. \cr
-However, it is also possible to perform a long-term initialisation if other indices than the warm-up ones are set in \code{IndPeriod_WarmUp} (e.g. \code{IndPeriod_WarmUp <- c(1:5000 , 1:5000 , 1:5000 , 1000:1365)}). \cr
+However, it is also possible to perform a long-term initialisation if other indices than the warm-up ones are set in \code{IndPeriod_WarmUp} (e.g. \code{IndPeriod_WarmUp <- c(1:5000, 1:5000, 1:5000, 1000:1365)}). \cr
 - remark 2:	it is also possible to completely disable the warm-up period when using \code{IndPeriod_WarmUp = 0L}. This is necessary if you want \code{IniStates} and / or \code{IniResLevels} to be the actual initial values of the model variables from your simulation (e.g. to perform a forecast form a given initial state). 
 
 \item \code{IniStates} and \code{IniResLevels} can be used to specify the initial model states. \cr
-- 
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