diff --git a/extreme_estimator/estimator/full_estimator.py b/extreme_estimator/estimator/full_estimator.py index f674fb3fbb74ec3343d3b79ea7319f73657cfbc3..d6df3dd7aba67c2e1efbc4bfd24a576970e2ac38 100644 --- a/extreme_estimator/estimator/full_estimator.py +++ b/extreme_estimator/estimator/full_estimator.py @@ -1,5 +1,5 @@ -from extreme_estimator.R_model.margin_model.abstract_margin_model import AbstractMarginModel -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel +from extreme_estimator.extreme_models.margin_model.abstract_margin_model import AbstractMarginModel +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel from extreme_estimator.estimator.abstract_estimator import AbstractEstimator from extreme_estimator.estimator.margin_estimator import SmoothMarginEstimator from extreme_estimator.estimator.max_stable_estimator import MaxStableEstimator diff --git a/extreme_estimator/estimator/margin_estimator.py b/extreme_estimator/estimator/margin_estimator.py index fd9c3e95d566581e8416d4f23d7e8d72a0e1b47c..30bb6836f6494ab6dc5fabe4077ae0d026d2b8fe 100644 --- a/extreme_estimator/estimator/margin_estimator.py +++ b/extreme_estimator/estimator/margin_estimator.py @@ -1,4 +1,4 @@ -from extreme_estimator.R_model.margin_model.abstract_margin_model import AbstractMarginModel +from extreme_estimator.extreme_models.margin_model.abstract_margin_model import AbstractMarginModel from extreme_estimator.estimator.abstract_estimator import AbstractEstimator from spatio_temporal_dataset.dataset.abstract_dataset import AbstractDataset diff --git a/extreme_estimator/estimator/max_stable_estimator.py b/extreme_estimator/estimator/max_stable_estimator.py index 6d40cc26dc863c86ab4ade7ab7a81803f3ca5574..b663ac670d7650d4740639eeaf72722f61c8233c 100644 --- a/extreme_estimator/estimator/max_stable_estimator.py +++ b/extreme_estimator/estimator/max_stable_estimator.py @@ -1,5 +1,5 @@ from extreme_estimator.estimator.abstract_estimator import AbstractEstimator -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel from spatio_temporal_dataset.dataset.abstract_dataset import AbstractDataset import numpy as np diff --git a/extreme_estimator/R_model/__init__.py b/extreme_estimator/extreme_models/__init__.py similarity index 100% rename from extreme_estimator/R_model/__init__.py rename to extreme_estimator/extreme_models/__init__.py diff --git a/extreme_estimator/R_model/abstract_model.py b/extreme_estimator/extreme_models/abstract_model.py similarity index 94% rename from extreme_estimator/R_model/abstract_model.py rename to extreme_estimator/extreme_models/abstract_model.py index ea8b2f20af9f8c94fca80cbf70a03ef288321c74..3653394139392135773c82a8223d7afae85237b0 100644 --- a/extreme_estimator/R_model/abstract_model.py +++ b/extreme_estimator/extreme_models/abstract_model.py @@ -1,4 +1,4 @@ -from extreme_estimator.R_model.utils import get_loaded_r +from extreme_estimator.extreme_models.utils import get_loaded_r class AbstractModel(object): diff --git a/extreme_estimator/R_model/gev/__init__.py b/extreme_estimator/extreme_models/margin_model/__init__.py similarity index 100% rename from extreme_estimator/R_model/gev/__init__.py rename to extreme_estimator/extreme_models/margin_model/__init__.py diff --git a/extreme_estimator/R_model/margin_model/abstract_margin_model.py b/extreme_estimator/extreme_models/margin_model/abstract_margin_model.py similarity index 92% rename from extreme_estimator/R_model/margin_model/abstract_margin_model.py rename to extreme_estimator/extreme_models/margin_model/abstract_margin_model.py index 384179f16667c6503e74dbded64963a6340b64c4..fea9bfccbc5e6fa747f92c57e24a5ae3ae9d9621 100644 --- a/extreme_estimator/R_model/margin_model/abstract_margin_model.py +++ b/extreme_estimator/extreme_models/margin_model/abstract_margin_model.py @@ -1,8 +1,8 @@ import numpy as np -from extreme_estimator.R_model.abstract_model import AbstractModel -from extreme_estimator.R_model.margin_function.abstract_margin_function import AbstractMarginFunction -from extreme_estimator.R_model.gev.gev_parameters import GevParams +from extreme_estimator.extreme_models.abstract_model import AbstractModel +from extreme_estimator.extreme_models.margin_model.margin_function.abstract_margin_function import AbstractMarginFunction +from extreme_estimator.gev_params import GevParams from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates diff --git a/extreme_estimator/R_model/margin_function/__init__.py b/extreme_estimator/extreme_models/margin_model/margin_function/__init__.py similarity index 100% rename from extreme_estimator/R_model/margin_function/__init__.py rename to extreme_estimator/extreme_models/margin_model/margin_function/__init__.py diff --git a/extreme_estimator/R_model/margin_function/abstract_margin_function.py b/extreme_estimator/extreme_models/margin_model/margin_function/abstract_margin_function.py similarity index 93% rename from extreme_estimator/R_model/margin_function/abstract_margin_function.py rename to extreme_estimator/extreme_models/margin_model/margin_function/abstract_margin_function.py index 5392b28799ae261b2bfc470c518f98374e5556c7..6db453091f16ea9c8890c8ba1fac0bc1641d6f29 100644 --- a/extreme_estimator/R_model/margin_function/abstract_margin_function.py +++ b/extreme_estimator/extreme_models/margin_model/margin_function/abstract_margin_function.py @@ -1,10 +1,8 @@ -from typing import List, Dict - import matplotlib.cm as cm import matplotlib.pyplot as plt import numpy as np -from extreme_estimator.R_model.gev.gev_parameters import GevParams +from extreme_estimator.gev_params import GevParams from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates diff --git a/extreme_estimator/R_model/margin_function/independent_margin_function.py b/extreme_estimator/extreme_models/margin_model/margin_function/independent_margin_function.py similarity index 94% rename from extreme_estimator/R_model/margin_function/independent_margin_function.py rename to extreme_estimator/extreme_models/margin_model/margin_function/independent_margin_function.py index ce255e4b1f9a33494d62682163fc86b47faa9e56..18fbd21ecd9fe8b6bc2ae2b55b7950cd017f1ee0 100644 --- a/extreme_estimator/R_model/margin_function/independent_margin_function.py +++ b/extreme_estimator/extreme_models/margin_model/margin_function/independent_margin_function.py @@ -1,9 +1,9 @@ -from typing import Dict, List +from typing import Dict import numpy as np -from extreme_estimator.R_model.gev.gev_parameters import GevParams -from extreme_estimator.R_model.margin_function.abstract_margin_function import AbstractMarginFunction +from extreme_estimator.gev_params import GevParams +from extreme_estimator.extreme_models.margin_model.margin_function.abstract_margin_function import AbstractMarginFunction from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates diff --git a/extreme_estimator/R_model/margin_function/plot_margin_functions.py b/extreme_estimator/extreme_models/margin_model/margin_function/plot_margin_functions.py similarity index 100% rename from extreme_estimator/R_model/margin_function/plot_margin_functions.py rename to extreme_estimator/extreme_models/margin_model/margin_function/plot_margin_functions.py diff --git a/extreme_estimator/R_model/margin_model/smooth_margin_model.py b/extreme_estimator/extreme_models/margin_model/smooth_margin_model.py similarity index 81% rename from extreme_estimator/R_model/margin_model/smooth_margin_model.py rename to extreme_estimator/extreme_models/margin_model/smooth_margin_model.py index bf29a650a0100facc3d14c8d3fd0537b7dad35f6..8d9febabb2a1d9bee04fb38a1e70af3e9daedca2 100644 --- a/extreme_estimator/R_model/margin_model/smooth_margin_model.py +++ b/extreme_estimator/extreme_models/margin_model/smooth_margin_model.py @@ -1,9 +1,9 @@ import numpy as np -from extreme_estimator.R_model.margin_function.abstract_margin_function import AbstractMarginFunction -from extreme_estimator.R_model.margin_function.independent_margin_function import LinearMarginFunction -from extreme_estimator.R_model.margin_model.abstract_margin_model import AbstractMarginModel -from extreme_estimator.R_model.gev.gev_parameters import GevParams +from extreme_estimator.extreme_models.margin_model.margin_function.abstract_margin_function import AbstractMarginFunction +from extreme_estimator.extreme_models.margin_model.margin_function.independent_margin_function import LinearMarginFunction +from extreme_estimator.extreme_models.margin_model.abstract_margin_model import AbstractMarginModel +from extreme_estimator.gev_params import GevParams class LinearMarginModel(AbstractMarginModel): diff --git a/extreme_estimator/R_model/margin_model/__init__.py b/extreme_estimator/extreme_models/max_stable_model/__init__.py similarity index 100% rename from extreme_estimator/R_model/margin_model/__init__.py rename to extreme_estimator/extreme_models/max_stable_model/__init__.py diff --git a/extreme_estimator/R_model/max_stable_model/abstract_max_stable_model.py b/extreme_estimator/extreme_models/max_stable_model/abstract_max_stable_model.py similarity index 97% rename from extreme_estimator/R_model/max_stable_model/abstract_max_stable_model.py rename to extreme_estimator/extreme_models/max_stable_model/abstract_max_stable_model.py index 1075d383d824a0bab1a3c427c2031b0f8cbf5c3a..8c5a5f31e59ca89d7c3442cc7ea74bfc127ea401 100644 --- a/extreme_estimator/R_model/max_stable_model/abstract_max_stable_model.py +++ b/extreme_estimator/extreme_models/max_stable_model/abstract_max_stable_model.py @@ -4,7 +4,7 @@ import numpy as np import rpy2 from rpy2.robjects import ListVector -from extreme_estimator.R_model.abstract_model import AbstractModel +from extreme_estimator.extreme_models.abstract_model import AbstractModel class AbstractMaxStableModel(AbstractModel): diff --git a/extreme_estimator/R_model/max_stable_model/max_stable_fit.R b/extreme_estimator/extreme_models/max_stable_model/max_stable_fit.R similarity index 100% rename from extreme_estimator/R_model/max_stable_model/max_stable_fit.R rename to extreme_estimator/extreme_models/max_stable_model/max_stable_fit.R diff --git a/extreme_estimator/R_model/max_stable_model/max_stable_models.py b/extreme_estimator/extreme_models/max_stable_model/max_stable_models.py similarity index 96% rename from extreme_estimator/R_model/max_stable_model/max_stable_models.py rename to extreme_estimator/extreme_models/max_stable_model/max_stable_models.py index f339db9e04bac6098686dbc6f679e87e83f9fd2d..1835c6a59e6eb0ba54ec8b14cb62d5a5bcca35e0 100644 --- a/extreme_estimator/R_model/max_stable_model/max_stable_models.py +++ b/extreme_estimator/extreme_models/max_stable_model/max_stable_models.py @@ -1,6 +1,6 @@ from enum import Enum -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel, \ +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel, \ AbstractMaxStableModelWithCovarianceFunction, CovarianceFunction diff --git a/extreme_estimator/R_model/max_stable_model/test.R b/extreme_estimator/extreme_models/max_stable_model/test.R similarity index 100% rename from extreme_estimator/R_model/max_stable_model/test.R rename to extreme_estimator/extreme_models/max_stable_model/test.R diff --git a/extreme_estimator/R_model/utils.py b/extreme_estimator/extreme_models/utils.py similarity index 100% rename from extreme_estimator/R_model/utils.py rename to extreme_estimator/extreme_models/utils.py diff --git a/extreme_estimator/R_model/max_stable_model/__init__.py b/extreme_estimator/gev/__init__.py similarity index 100% rename from extreme_estimator/R_model/max_stable_model/__init__.py rename to extreme_estimator/gev/__init__.py diff --git a/extreme_estimator/R_model/gev/gev_mle_fit.R b/extreme_estimator/gev/gev_mle_fit.R similarity index 100% rename from extreme_estimator/R_model/gev/gev_mle_fit.R rename to extreme_estimator/gev/gev_mle_fit.R diff --git a/extreme_estimator/R_model/gev/gev_mle_fit.py b/extreme_estimator/gev/gev_mle_fit.py similarity index 88% rename from extreme_estimator/R_model/gev/gev_mle_fit.py rename to extreme_estimator/gev/gev_mle_fit.py index f879f2bfd54224fab3affe2684428fccf60cd9b5..0a19e0cfe5f50209629bc03a5697777cef103ffb 100644 --- a/extreme_estimator/R_model/gev/gev_mle_fit.py +++ b/extreme_estimator/gev/gev_mle_fit.py @@ -4,8 +4,8 @@ import rpy2.robjects.numpy2ri as rpyn import os.path as op # Defining some constants -from extreme_estimator.R_model.gev.gev_parameters import GevParams -from extreme_estimator.R_model.utils import get_associated_r_file +from extreme_estimator.gev_params import GevParams +from extreme_estimator.extreme_models.utils import get_associated_r_file def gev_mle_fit(x_gev: np.ndarray, start_loc=0, start_scale=1, start_shape=0): diff --git a/extreme_estimator/R_model/gev/gev_parameters.py b/extreme_estimator/gev_params.py similarity index 100% rename from extreme_estimator/R_model/gev/gev_parameters.py rename to extreme_estimator/gev_params.py diff --git a/extreme_estimator/robustness_plot/msp_robustness.py b/extreme_estimator/robustness_plot/msp_robustness.py index 6124a4e36b9c1005e9ac21d908615e9b476a902a..fa902d3d92041a7296ae86c9c3770608e5cde0a0 100644 --- a/extreme_estimator/robustness_plot/msp_robustness.py +++ b/extreme_estimator/robustness_plot/msp_robustness.py @@ -1,10 +1,12 @@ -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel, CovarianceFunction -from extreme_estimator.R_model.max_stable_model.max_stable_models import Smith, BrownResnick, Schlather, ExtremalT +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel, \ + CovarianceFunction +from extreme_estimator.extreme_models.max_stable_model.max_stable_models import Smith, BrownResnick, Schlather, \ + ExtremalT from extreme_estimator.estimator.abstract_estimator import AbstractEstimator from extreme_estimator.estimator.max_stable_estimator import MaxStableEstimator from extreme_estimator.robustness_plot.multiple_plot import MultiplePlot from extreme_estimator.robustness_plot.single_plot import SinglePlot -from spatio_temporal_dataset.dataset.simulation_dataset import SimulatedDataset +from spatio_temporal_dataset.dataset.simulation_dataset import SimulatedDataset, MaxStableDataset from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates from spatio_temporal_dataset.spatial_coordinates.alps_station_2D_coordinates import \ AlpsStation2DCoordinatesBetweenZeroAndOne, AlpsStationCoordinatesBetweenZeroAndTwo @@ -39,9 +41,9 @@ class MspSpatial(object): nb_station = self.NbStationItem.value_from_kwargs(**kwargs_single_point) nb_obs = self.NbObservationItem.value_from_kwargs(**kwargs_single_point) # Run the estimation - spatial_coordinate = spatial_coordinate_class.from_nb_points(nb_points=nb_station) - dataset = SimulatedDataset.from_max_stable_sampling(nb_obs=nb_obs, max_stable_model=max_stable_model, - spatial_coordinates=spatial_coordinate) + spatial_coordinates = spatial_coordinate_class.from_nb_points(nb_points=nb_station) + dataset = MaxStableDataset.from_sampling(nb_obs=nb_obs, max_stable_model=max_stable_model, + spatial_coordinates=spatial_coordinates) estimator = MaxStableEstimator(dataset, max_stable_model) estimator.fit() return estimator.scalars(max_stable_model.params_sample) @@ -88,7 +90,7 @@ def multiple_spatial_robustness_alps(): nb_samples=nb_sample, main_title="Max stable analysis with {} years of observations".format(nb_observation), plot_png_filename=plot_name - ) + ) # Load all the models msp_models = [Smith(), BrownResnick()] # for covariance_function in CovarianceFunction: diff --git a/spatio_temporal_dataset/dataset/simulation_dataset.py b/spatio_temporal_dataset/dataset/simulation_dataset.py index bcf213162352ed6eb08fc2bef7f17df50fe0a580..492bbeca9e5e7f53de61506a9c5866e3b42e6243 100644 --- a/spatio_temporal_dataset/dataset/simulation_dataset.py +++ b/spatio_temporal_dataset/dataset/simulation_dataset.py @@ -1,5 +1,5 @@ -from extreme_estimator.R_model.margin_model.abstract_margin_model import AbstractMarginModel -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel +from extreme_estimator.extreme_models.margin_model.abstract_margin_model import AbstractMarginModel +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel from spatio_temporal_dataset.dataset.abstract_dataset import AbstractDataset from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates from spatio_temporal_dataset.temporal_observations.abstract_temporal_observations import AbstractTemporalObservations diff --git a/spatio_temporal_dataset/spatial_coordinates/generated_coordinates.py b/spatio_temporal_dataset/spatial_coordinates/generated_coordinates.py index c9ae9953f0128685e709bde76b88ae55bdcfedef..52f535957f07c1a4f0e9c030134fb744dd034dd1 100644 --- a/spatio_temporal_dataset/spatial_coordinates/generated_coordinates.py +++ b/spatio_temporal_dataset/spatial_coordinates/generated_coordinates.py @@ -2,7 +2,7 @@ import math import numpy as np import pandas as pd -from extreme_estimator.R_model.utils import get_loaded_r +from extreme_estimator.extreme_models.utils import get_loaded_r from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates import matplotlib.pyplot as plt diff --git a/spatio_temporal_dataset/temporal_observations/annual_maxima_observations.py b/spatio_temporal_dataset/temporal_observations/annual_maxima_observations.py index a24f6cdf8be57a77f47e7f3f956bef6ee8276b52..bc461d07b53db2d323cb9329e0429ab4616f777a 100644 --- a/spatio_temporal_dataset/temporal_observations/annual_maxima_observations.py +++ b/spatio_temporal_dataset/temporal_observations/annual_maxima_observations.py @@ -1,7 +1,7 @@ import pandas as pd -from extreme_estimator.R_model.margin_model.abstract_margin_model import AbstractMarginModel -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel +from extreme_estimator.extreme_models.margin_model.abstract_margin_model import AbstractMarginModel +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import AbstractMaxStableModel from spatio_temporal_dataset.spatial_coordinates.abstract_spatial_coordinates import AbstractSpatialCoordinates from spatio_temporal_dataset.temporal_observations.abstract_temporal_observations import AbstractTemporalObservations diff --git a/test/test_extreme_estimator/test_R_model/test_gev_mle_fit.py b/test/test_extreme_estimator/test_R_model/test_gev_mle_fit.py index 60da9accb22df9d30c2336167bca949f34046d44..c7c7f8cf6be9d8aabea84bcd5981133ed5f54159 100644 --- a/test/test_extreme_estimator/test_R_model/test_gev_mle_fit.py +++ b/test/test_extreme_estimator/test_R_model/test_gev_mle_fit.py @@ -2,8 +2,8 @@ import unittest import numpy as np -from extreme_estimator.R_model.gev.gev_mle_fit import GevMleFit -from extreme_estimator.R_model.utils import get_loaded_r +from extreme_estimator.gev.gev_mle_fit import GevMleFit +from extreme_estimator.extreme_models.utils import get_loaded_r class TestGevMleFit(unittest.TestCase): diff --git a/test/test_extreme_estimator/test_R_model/test_margin_function.py b/test/test_extreme_estimator/test_R_model/test_margin_function.py index f9a75c26427c6bab4bb005bc90b85af158ea452c..2981adb2478ef37299c6b70258c76063d6c1f61f 100644 --- a/test/test_extreme_estimator/test_R_model/test_margin_function.py +++ b/test/test_extreme_estimator/test_R_model/test_margin_function.py @@ -1,13 +1,12 @@ import unittest -from extreme_estimator.R_model.gev.gev_parameters import GevParams -from extreme_estimator.R_model.margin_function.independent_margin_function import LinearMarginFunction -from extreme_estimator.R_model.margin_model.smooth_margin_model import ConstantMarginModel, LinearShapeAxis0MarginModel +from extreme_estimator.gev_params import GevParams +from extreme_estimator.extreme_models.margin_model.smooth_margin_model import LinearShapeAxis0MarginModel from spatio_temporal_dataset.spatial_coordinates.generated_coordinates import CircleCoordinatesRadius1 class TestLinearMarginModel(unittest.TestCase): - DISPLAY = True + DISPLAY = False def test_visualization_2D(self): spatial_coordinates = CircleCoordinatesRadius1.from_nb_points(nb_points=50) diff --git a/test/test_extreme_estimator/test_estimator/test_margin_estimators.py b/test/test_extreme_estimator/test_estimator/test_margin_estimators.py index 322fd3094fa690574690d029098bbdc5d54df9fb..480ebba2df2b33ad4a51c4d51fe9b073946b5d11 100644 --- a/test/test_extreme_estimator/test_estimator/test_margin_estimators.py +++ b/test/test_extreme_estimator/test_estimator/test_margin_estimators.py @@ -1,7 +1,7 @@ import unittest -from extreme_estimator.R_model.margin_model.abstract_margin_model import AbstractMarginModel -from extreme_estimator.R_model.margin_model.smooth_margin_model import ConstantMarginModel +from extreme_estimator.extreme_models.margin_model.abstract_margin_model import AbstractMarginModel +from extreme_estimator.extreme_models.margin_model.smooth_margin_model import ConstantMarginModel from extreme_estimator.estimator.margin_estimator import SmoothMarginEstimator from spatio_temporal_dataset.dataset.simulation_dataset import MarginDataset from spatio_temporal_dataset.spatial_coordinates.generated_coordinates import CircleCoordinatesRadius1 diff --git a/test/test_extreme_estimator/test_estimator/test_max_stable_estimators.py b/test/test_extreme_estimator/test_estimator/test_max_stable_estimators.py index c00ef17d30fcb9e1f4be1c12bfaa09bf3452557e..a523f027ad6cacb8ba5298ac92737afa1607aa52 100644 --- a/test/test_extreme_estimator/test_estimator/test_max_stable_estimators.py +++ b/test/test_extreme_estimator/test_estimator/test_max_stable_estimators.py @@ -1,8 +1,8 @@ import unittest -from extreme_estimator.R_model.max_stable_model.abstract_max_stable_model import \ +from extreme_estimator.extreme_models.max_stable_model.abstract_max_stable_model import \ AbstractMaxStableModelWithCovarianceFunction, CovarianceFunction -from extreme_estimator.R_model.max_stable_model.max_stable_models import Smith, BrownResnick, Schlather, \ +from extreme_estimator.extreme_models.max_stable_model.max_stable_models import Smith, BrownResnick, Schlather, \ Geometric, ExtremalT, ISchlather from extreme_estimator.estimator.max_stable_estimator import MaxStableEstimator from spatio_temporal_dataset.dataset.simulation_dataset import MaxStableDataset