test directory issue with qsub 2

launch.cluster/launch_all_data.glmer.bash

@@ -8,7 +8,7 @@ pwd
 
 for trait in "'SLA'" "'Leaf.N'" "'Wood.density'" "'Max.height'" "'Seed.mass'"; do
 
-  	echo "/usr/local/R/R-3.0.1/bin/Rscript -e \"source('R/analysis/glmer.run.R'); print(getwd());print('done')\"" > Rscript_temp/gdata1$trait.sh
+  	echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/glmer.run.R'); print(getwd());print('done')\"" > Rscript_temp/gdata1$trait.sh
 	qsub Rscript_temp/gdata1$trait.sh -l nodes=1:ppn=1,mem=8gb -N "gdata1$trait" -q opt32G -j oe
 
   	# # echo "/usr/local/R/R-3.0.1/bin/Rscript -e \"source('R/analysis/glmer.run.R'); load.and.save.data.for.glmer($trait, cat.TF=TRUE);print('done')\"" > Rscript_temp/gdata2$trait.sh