Commit 63b3a6db authored by Kunstler Georges's avatar Kunstler Georges
Browse files

launch all new intra null and ecocode

parent aae1446a
......@@ -46,8 +46,8 @@ model.files.lmer.Tf.4 <- file.path(path.model,
c("model.lmer.LOGLIN.ER.AD.Tf.MAT.MAP.r.ecocode.species.R",
"model.lmer.LOGLIN.ER.AD.Tf.MAT.MAP.r.ecocode.fixed.biomes.species.R"))
model.files.lmer.Tf.intra.0 <- file.path(path.model,
c("model.lmer.LOGLIN.intra.r.set.species.R",
"model.lmer.LOGLIN.intra.r.set.fixed.biomes.species.R"))
c("model.lmer.LOGLIN.MAT.MAP.intra.r.set.species.R",
"model.lmer.LOGLIN.MAT.MAP.intra.r.set.fixed.biomes.species.R"))
model.files.lmer.Tf.intra.1 <- file.path(path.model,
c("model.lmer.LOGLIN.ER.AD.Tf.intra.r.set.species.R",
"model.lmer.LOGLIN.ER.AD.Tf.intra.r.set.fixed.biomes.species.R"))
......
......@@ -54,13 +54,13 @@ samplesize=$1
# echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.3[2], merge.biomes.TF = TRUE, run.lmer,$trait);print('done')\"" > Rscript_temp/allTP2${trait}.sh
# qsub Rscript_temp/allTP2${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.TP2${trait}" -q opt32G -j oe
# # # INTRA 0
# echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.intra.0[1], run.lmer,$trait, data.type = 'intra');print('done')\"" > Rscript_temp/allINTRA0${trait}.sh
# qsub Rscript_temp/allINTRA0${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.INTRA0${trait}" -q opt32G -j oe
# # INTRA 0
echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.intra.0[1], run.lmer,$trait, data.type = 'intra');print('done')\"" > Rscript_temp/allINTRA0${trait}.sh
qsub Rscript_temp/allINTRA0${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.INTRA0${trait}" -q opt32G -j oe
# echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.intra.0[2], merge.biomes.TF = TRUE, run.lmer,$trait,data.type = 'intra');print('done')\"" > Rscript_temp/allINTRA02${trait}.sh
# qsub Rscript_temp/allINTRA02${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.INTRA02${trait}" -q opt32G -j oe
echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.intra.0[2], merge.biomes.TF = TRUE, run.lmer,$trait,data.type = 'intra');print('done')\"" > Rscript_temp/allINTRA02${trait}.sh
qsub Rscript_temp/allINTRA02${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.INTRA02${trait}" -q opt32G -j oe
# # # INTRA 1
# echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.intra.1[1], run.lmer,$trait, data.type = 'intra');print('done')\"" > Rscript_temp/allINTRA${trait}.sh
......
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