launch data for intra

launch.cluster/launch_all_data.lmer.bash

@@ -8,11 +8,10 @@ for trait in "'SLA'" "'Leaf.N'" "'Wood.density'" "'Max.height'" "'Seed.mass'"; d
 
   	echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait);print('done')\"" > Rscript_temp/data1$trait.sh
 	qsub Rscript_temp/data1$trait.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "data1$trait" -q opt32G -j oe
-  	echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait, data.type = 'all.census');print('done')\"" > Rscript_temp/data1A$trait.sh
-	qsub Rscript_temp/data1A$trait.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "data1A$trait" -q opt32G -j oe
+
+  	echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait, data.type = 'intra');print('done')\"" > Rscript_temp/data1I$trait.sh
+	qsub Rscript_temp/data1I$trait.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "data1I$trait" -q opt32G -j oe
 
 done
 
-  	echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer('SLA', data.type = 'Multi');print('done')\"" > Rscript_temp/dataMulti.sh
-	qsub Rscript_temp/dataMulti.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "dataMulti" -q opt32G -j oe