Commit 9bd61a54 authored by kunstler's avatar kunstler
Browse files

send lmer with restricted data

parent 158632bc
......@@ -4,8 +4,8 @@ mkdir -p Rscript_temp
for trait in "'SLA'" "'Wood.density'" "'Max.height'"; do
Rscript -e "source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait);print('done')"&
Rscript -e "source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait, data.type = 'all.census');print('done')"&
Rscript -e "source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait);print('done')"
# Rscript -e "source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer($trait, data.type = 'all.census');print('done')"&
done
Rscript -e "source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer('SLA', data.type = 'Multi');print('done')"&
# Rscript -e "source('R/analysis/lmer.run.R'); load.and.save.data.for.lmer('SLA', data.type = 'Multi');print('done')"&
......@@ -23,13 +23,13 @@ samplesize=$1
for trait in "'SLA'" "'Wood.density'" "'Max.height'" ; do
# # # ALL data
# echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.1[1], run.lmer,$trait);print('done')\"" > Rscript_temp/allf${trait}.sh
# qsub Rscript_temp/allf${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.f${trait}" -q opt32G -j oe
# # ALL data
echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.1[1], run.lmer,$trait);print('done')\"" > Rscript_temp/allf${trait}.sh
qsub Rscript_temp/allf${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.f${trait}" -q opt32G -j oe
# echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.1[2], merge.biomes.TF = TRUE, run.lmer,$trait);print('done')\"" > Rscript_temp/allf2${trait}.sh
# qsub Rscript_temp/allf2${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.f2${trait}" -q opt32G -j oe
echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.1[2], merge.biomes.TF = TRUE, run.lmer,$trait);print('done')\"" > Rscript_temp/allf2${trait}.sh
qsub Rscript_temp/allf2${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "lmerall2all.f2${trait}" -q opt32G -j oe
# # ALL MAT MAP
echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/lmer.run.R'); run.multiple.model.for.set.one.trait(model.files.lmer.Tf.3[1], run.lmer,$trait, data.type = 'simple');print('done')\"" > Rscript_temp/allTP${trait}.sh
......
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