Commit e7ea46b3 authored by kunstler's avatar kunstler
Browse files

stan launch bugs fixed

parent 27f2e165
......@@ -20,8 +20,8 @@ fi
samplesize=$1
# "'Wood.density'" "'Max.height'"
for trait in "'SLA'" ; do
#
for trait in "'SLA'" "'Wood.density'" "'Max.height'"; do
echo "/usr/local/R/R-3.1.1/bin/Rscript -e \"source('R/analysis/stan.run.R'); run.multiple.model.for.set.one.trait(model.files.stan.Tf.2[3], run.stan,$trait,type.filling='species', sample.size = NA,iter = $iter, warmup = $warmup, chains = 1, chain_id = 1, init.TF = FALSE, merge.biomes.TF = TRUE);print('done')\"" > Rscript_temp/speciesstanA1${trait}.sh
qsub Rscript_temp/speciesstanA1${trait}.sh -d ~/trait.competition.workshop -l nodes=1:ppn=1,mem=8gb -N "stanallA1${trait}" -q opt32G -j oe
......
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