diff --git a/server.R b/server.R index a127f626b32c69a2e43f1806c0c5c053793e1c4d..16f183b1e18355a7cca0b491c110a67df5cd93cf 100644 --- a/server.R +++ b/server.R @@ -213,18 +213,18 @@ shinyServer choices = rank_names(data16S()), inline = TRUE ), - dataTableOutput("tableGlom") + DT::dataTableOutput("tableGlom") ) ) ) }) - output$tableGlom <- renderDataTable({ + output$tableGlom <- DT::renderDataTable(server = FALSE, { Glom <- tax_glom(data16S(), input$glomRank) taxTableGlom <- Glom %>% tax_table() %>% as.data.frame(stringsAsFactors = FALSE) %>% - dplyr::select(1:input$glomRank) %>% + dplyr::select(input$glomRank:1) %>% tibble::rownames_to_column() otuTableGlom <- Glom %>% otu_table() %>% @@ -233,24 +233,8 @@ shinyServer joinGlom <- dplyr::left_join(taxTableGlom, otuTableGlom, by = "rowname") %>% dplyr::select(-rowname) - return(joinGlom) - }, - options = list( - filter = "top", - dom = "lBtip", - pageLength = 10, - lengthMenu = list(c(-1, 10, 25, 50, 100), list('All', '10', '25', '50', '100')), - buttons = list( - 'colvis', - list( - extend = 'collection', - buttons = c('copy', 'csv', 'excel', 'pdf'), - text = 'Download' - ) - ), - colReorder = TRUE, - scrollX = TRUE - )) + beautifulTable(joinGlom) + }) output$histUI <- renderUI({ validate(need(data16S(), ""))