User-manual.md

@@ -6,12 +6,12 @@
 - [Principles of LSPIV](User-Manual/General-information#tools-principles-of-lspiv)
 - [The Open-Source Software **_Fudaa-LSPIV_**](User-Manual/General-information#computer-the-open-source-software-fudaa-lspiv)
 
-[**2. Getting started with _Fudaa-LSPIV_**](User-Manual/Getting-started-with-Fudaa-LSPIV)
+[**2. Getting started with _Fudaa-LSPIV_**](User-Manual/Getting-started-with-fudaa-lspiv)
 - [Installation of the **_Fudaa-LSPIV_** software](User-Manual/Getting-started-with-fudaa-lspiv#installation-of-the-fudaa-lspiv-software)
 - [Languages](User-Manual/Getting-started-with-fudaa-lspiv#languages)
 - [Main window architecture](User-Manual/Getting-started-with-fudaa-lspiv#map-main-window-architecture)
 
-[**3. Start a _Fudaa-LSPIV_ study**](User-Manual/start-a-fudaa-lspiv-study)
+[**3. Starting a _Fudaa-LSPIV_ study**](User-Manual/Starting-a-fudaa-lspiv-study)
 
 - [Requirements to start a **_Fudaa-LSPIV_** study](User-Manual/start-a-fudaa-lspiv-study#requirements-to-start-a-fudaa-lspiv-study)
 - [Create a new study](User-Manual/start-a-fudaa-lspiv-study#create-a-new-study)
@@ -39,7 +39,7 @@
 - [Transforming all images](User-Manual/complete-orthorectification#transforming-all-images)
 - [Downsampling transformed images](User-Manual/complete-orthorectification#downsampling-transformed-images)
 
-[**6. Calculating tracer displacement velocity**](User-Manual/calculating-tracer-displacement-velocity)
+[**6. Tracers velocity computation**](User-manual/Tracers-velocity-computation)
 
 - [Principles](User-Manual/calculating-tracer-displacement-velocity#principles)
 - [Manual velocity calculation](User-Manual/calculating-tracer-displacement-velocity#manual-velocity-calculation)
@@ -47,7 +47,7 @@
 - [Calculation grid](User-Manual/calculating-tracer-displacement-velocity#calculation-grid)
 - [Calculating tracer displacement velocities](User-Manual/calculating-tracer-displacement-velocity#calculating-tracer-displacement-velocities)
 
-[**7. Post-processing of calculated velocities**](User-Manual/post-processing-calculated-velocities)
+[**7. Post-processing of velocity results**](User manual/Post-processing-of-velocity-results)
 
 - [Filtering instantaneous results](User-Manual/post-processing-calculated-velocities#filtering-instantaneous-results)
    - [1. Median test](User-Manual/post-processing-calculated-velocities#1-median-test)
@@ -60,20 +60,21 @@
 - [Averaging the results](User-Manual/post-processing-calculated-velocities#averaging-the-results)
 - [Statistics on velocity results](User-Manual/post-processing-calculated-velocities#statistics-on-velocity-results)
 
-[**8. Displaying velocity results**](User-Manual/displaying-velocity-results)
+[**8. Displaying velocity results**](User-manual/Displaying-velocity-results)
 
 - [Description of result layers for velocity calculations](User-Manual/displaying-velocity-results#description-of-result-layers-for-velocity-calculations)
 - [Velocity layer](User-Manual/displaying-velocity-results#velocity-layer)
 
-[**9. Discharge calculation**](User-Manual/discharge-calculation)
+[**9. Discharge computation**](User-manual/Discharge-computation)
 
 - [Specifying one or more bathymetric transects](User-Manual/discharge-calculation#specifying-one-or-more-bathymetric-transects)
 - [Inverting transects](User-Manual/discharge-calculation#inverting-transects)
 - [Transect parameters](User-Manual/discharge-calculation#transect-parameters)
 - [Discharge calculation](User-Manual/discharge-calculation#discharge-calculation)
 - [Exporting the gauging report](User-Manual/discharge-calculation#exporting-the-gauging-report)
-
-[**11. Recalculating an existing study**](User-Manual/recalculating-an-existing-study)
+  
+[**10. Data export**](User-manual/Data-export)
+[**11. Relaunch existing study computations**](User-manual/relaunch-existing-study-computations)
 
 - [Cleaning calculation results](User-Manual/recalculating-an-existing-study#cleaning-calculation-results)
 
@@ -81,23 +82,11 @@
 
 - [The gauging report is not generated](User-Manual/known-bugs-and-workarounds#the-gauging-report-is-not-generated)
 
-[**13. Further details**](User-Manual/further-details)
+[**13. References**](User-manual/References)
+
+# 
+
 
-- [Principles of stabilization](User-Manual/further-details#principles-of-stabilization)
-   - [Point matching](User-Manual/further-details#point-matching)
-   - [Transformation estimation](User-Manual/further-details#transformation-estimation)
-- [Principles of orthorectification](User-Manual/further-details#principles-of-orthorectification-1)
-   - [The pinhole model and its solution: General 3D case](User-Manual/further-details#the-pinhole-model-and-its-solution-general-3d-case)
-   - [The pinhole model and its solution: 2D specific case](User-Manual/further-details#the-pinhole-model-and-its-solution-2d-specific-case)
-   - [Creating orthoimages](User-Manual/further-details#creating-orthoimages)
-- [Principles of measuring tracer displacement velocity](User-Manual/further-details#principles-of-measuring-tracer-displacement-velocity)
-- [Detailed presentation of filters](User-Manual/further-details#detailed-presentation-of-filters)
-- [Principles of discharge calculation](User-Manual/further-details#principles-of-discharge-calculation)
-   - [Definition and interpolation of the bathymetric profile](User-Manual/further-details#definition-and-interpolation-of-the-bathymetric-profile)
-   - [Estimating the average velocity at each point on the transect](User-Manual/further-details#estimating-the-average-velocity-at-each-point-on-the-transect)
-   - [Calculating discharge across each transect](User-Manual/further-details#calculating-discharge-across-each-transect)
 
-[**14. Bibliographic references**](#bibliographic-references)
 
-#