update vignette

inst/doc/tutorial.R → doc/tutorial.R

@@ -59,7 +59,7 @@ knitr::opts_chunk$set(
 #  Map.Beta.Diversity(Input.Image.File, Output.Dir, Spatial.Res,
 #                     nbCPU = nbCPU, MaxRAM = MaxRAM)
 
-## ----Validation----------------------------------------------------------
+## ----alpha and beta diversity indices from vector layer------------------
 #  # location of the spectral species raster needed for validation
 #  TypePCA     = 'SPCA'
 #  Dir.Raster  = file.path(Output.Dir,basename(Input.Image.File),TypePCA,'SpectralSpecies')

inst/doc/tutorial.Rmd → doc/tutorial.Rmd

@@ -144,10 +144,10 @@ Map.Beta.Diversity(Input.Image.File, Output.Dir, Spatial.Res,
                    nbCPU = nbCPU, MaxRAM = MaxRAM)
 ```
 
-# Validation
+# $\alpha$ and $\beta$ diversity indices from vector layer
 The folowing code computes $\alpha$ and $\beta$ diversity from field plots and extracts the corresponding diversity index from previouly computed rasters in order to have a validation analysis.
 
-```{r Validation}
+```{r alpha and beta diversity indices from vector layer}
 # location of the spectral species raster needed for validation
 TypePCA     = 'SPCA'
 Dir.Raster  = file.path(Output.Dir,basename(Input.Image.File),TypePCA,'SpectralSpecies')

inst/doc/tutorial.html → doc/tutorial.html

@@ -200,8 +200,8 @@ Index.Alpha   =<span class="st"> </span><span class="kw">c</span>(<span class="s
                    <span class="dt">nbCPU =</span> nbCPU, <span class="dt">MaxRAM =</span> MaxRAM)</code></pre></div>
 </div>
 </div>
-<div id="validation" class="section level1">
-<h1><span class="header-section-number">3</span> Validation</h1>
+<div id="alpha-and-beta-diversity-indices-from-vector-layer" class="section level1">
+<h1><span class="header-section-number">3</span> <span class="math inline">\(\alpha\)</span> and <span class="math inline">\(\beta\)</span> diversity indices from vector layer</h1>
 <p>The folowing code computes <span class="math inline">\(\alpha\)</span> and <span class="math inline">\(\beta\)</span> diversity from field plots and extracts the corresponding diversity index from previouly computed rasters in order to have a validation analysis.</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="co"># location of the spectral species raster needed for validation</span>
 TypePCA     =<span class="st"> 'SPCA'</span>