diff --git a/R/gap_detection.R b/R/gap_detection.R index a9a56efbcd2f20075f6a9ee55acead52ebf9b6e4..5203670f07cdb1f542257c3b1d863179d992fb74 100755 --- a/R/gap_detection.R +++ b/R/gap_detection.R @@ -68,9 +68,9 @@ #' terra::plot(chm_chablais3, main = "Initial image") #' #' # plot binary image of gaps -#' terra::plot(gaps$gap_id > 0, main = "Gaps", legend = FALSE) -#' terra::plot(gaps1$gap_id > 0, main = "Gaps, with reconstruction", legend = FALSE) -#' terra::plot(gaps2$gap_id > 0, main = "Gaps, no width criterion", legend = FALSE) +#' terra::plot(gaps$gap_id > 0, main = "Gaps", col = "green", legend = FALSE) +#' terra::plot(gaps1$gap_id > 0, main = "Gaps, with reconstruction", col = "green", legend = FALSE) +#' terra::plot(gaps2$gap_id > 0, main = "Gaps, no width criterion", col = "green", legend = FALSE) #' #' # plot filtered CHM #' terra::plot(gaps2$filled_chm, main = "Filtered CHM") @@ -219,7 +219,7 @@ gap_detection <- } # set surface of non gaps to NA r_surface[is.na(r_labels)] <- NA - # removal of labels with small surface + # removal of labels with small or very large surface dummy <- (r_surface < min_gap_surface) | (r_surface > max_gap_surface) r_labels[dummy] <- r_surface[dummy] <- NA output <- c(r_labels, r_surface, r.nl) @@ -263,7 +263,7 @@ gap_detection <- #' terra::plot(chm_chablais3, main = "Initial image") #' #' # plot binary image of gaps -#' terra::plot(gaps$gap_id > 0, main = "Gaps", legend = FALSE) +#' terra::plot(gaps$gap_id > 0, main = "Gaps", col = "green", legend = FALSE) #' #' # plot edges #' terra::plot(edges_inside, main = "Edges (inside)", legend = FALSE) diff --git a/R/tree_detection.R b/R/tree_detection.R index 2dfd07785f2251b21374eca6101a0b57ef64eed2..b0e82e8c49a05ad5cfb0f975f0a9da84b9d43bac 100755 --- a/R/tree_detection.R +++ b/R/tree_detection.R @@ -943,7 +943,6 @@ tree_segmentation <- function(dem, dtm = NULL, crown_prop = NULL, crown_hmin = N # output <- c(maxi, dem_w, dem_nl, dem_gs) names(output) <- c("local_maxima", "segments_id", "filled_dem", "smoothed_dem") - print(dots) output } diff --git a/man/edge_detection.Rd b/man/edge_detection.Rd index f39f3f7141dc20525e43b924e05b9b44a45ca196..2f5f6b4fa9fe147d47d3e3cef6612952bb01469c 100755 --- a/man/edge_detection.Rd +++ b/man/edge_detection.Rd @@ -46,7 +46,7 @@ sum(terra::values(edges_outside)) / (nrow(edges_outside) * ncol(edges_outside)) terra::plot(chm_chablais3, main = "Initial image") # plot binary image of gaps -terra::plot(gaps$gap_id > 0, main = "Gaps", legend = FALSE) +terra::plot(gaps$gap_id > 0, main = "Gaps", col = "green", legend = FALSE) # plot edges terra::plot(edges_inside, main = "Edges (inside)", legend = FALSE) diff --git a/man/gap_detection.Rd b/man/gap_detection.Rd index 150ecc9683d604af91490ec8d88b5598bbf08031..da798b59c14a1df110b09cd97f38d41c12758eba 100755 --- a/man/gap_detection.Rd +++ b/man/gap_detection.Rd @@ -96,9 +96,9 @@ table(terra::values(gaps2$gap_id)) * terra::res(gaps2$gap_id)[1]^2 terra::plot(chm_chablais3, main = "Initial image") # plot binary image of gaps -terra::plot(gaps$gap_id > 0, main = "Gaps", legend = FALSE) -terra::plot(gaps1$gap_id > 0, main = "Gaps, with reconstruction", legend = FALSE) -terra::plot(gaps2$gap_id > 0, main = "Gaps, no width criterion", legend = FALSE) +terra::plot(gaps$gap_id > 0, main = "Gaps", col = "green", legend = FALSE) +terra::plot(gaps1$gap_id > 0, main = "Gaps, with reconstruction", col = "green", legend = FALSE) +terra::plot(gaps2$gap_id > 0, main = "Gaps, no width criterion", col = "green", legend = FALSE) # plot filtered CHM terra::plot(gaps2$filled_chm, main = "Filtered CHM")