function varargout = CellTrackerSettingsManual(varargin) % CELLTRACKERSETTINGSMANUAL M-file for CellTrackerSettingsManual.fig % CELLTRACKERSETTINGSMANUAL, by itself, creates a new CELLTRACKERSETTINGSMANUAL or raises the existing % singleton*. % % H = CELLTRACKERSETTINGSMANUAL returns the handle to a new CELLTRACKERSETTINGSMANUAL or the handle to % the existing singleton*. % % CELLTRACKERSETTINGSMANUAL('CALLBACK',hObject,eventData,handles,...) calls the local % function named CALLBACK in CELLTRACKERSETTINGSMANUAL.M with the given input arguments. % % CELLTRACKERSETTINGSMANUAL('Property','Value',...) creates a new CELLTRACKERSETTINGSMANUAL or raises the % existing singleton*. Starting from the left, property value pairs are % applied to the GUI before CellTrackerSettingsManual_OpeningFcn gets called. An % unrecognized property name or invalid value makes property application % stop. All inputs are passed to CellTrackerSettingsManual_OpeningFcn via varargin. % % *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one % instance to run (singleton)". % % See also: GUIDE, GUIDATA, GUIHANDLES % Edit the above text to modify the response to help CellTrackerSettingsManual % Last Modified by GUIDE v2.5 30-Jun-2015 10:18:11 % Begin initialization code - DO NOT EDIT gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @CellTrackerSettingsManual_OpeningFcn, ... 'gui_OutputFcn', @CellTrackerSettingsManual_OutputFcn, ... 'gui_LayoutFcn', [] , ... 'gui_Callback', []); if nargin && ischar(varargin{1}) gui_State.gui_Callback = str2func(varargin{1}); end if nargout [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); else gui_mainfcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT % --- Executes just before CellTrackerSettingsManual is made visible. function CellTrackerSettingsManual_OpeningFcn(hObject, eventdata, handles, varargin) % This function has no output args, see OutputFcn. % hObject handle to figure % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % varargin command line arguments to CellTrackerSettingsManual (see VARARGIN) global f_handles f_handles.flagGUIclosedWithXrun = 1; % Choose default command line output for CellTrackerSettingsManual handles.output = hObject; % Update handles structure guidata(hObject, handles); % UIWAIT makes CellTrackerSettingsManual wait for user response (see UIRESUME) % uiwait(handles.figure1); %% set parameters to show try % Close the other windows if ishandle(f_handles.h_GUIsetG); close(f_handles.h_GUIsetG); end; if ishandle(f_handles.h_GUIsetT); close(f_handles.h_GUIsetT); end; if ishandle(f_handles.h_GUIsetS); close(f_handles.h_GUIsetS); end; %if ishandle(f_handles.h_GUIsetM); close(f_handles.h_GUIsetM); end; if ishandle(f_handles.h_GUIstatistics); close(f_handles.h_GUIstatistics); end; % Interpolation selection if f_handles.DynamicInterpolation == 1 set(handles.radiobutton1, 'Value', 1); set(handles.radiobutton2, 'Value', 0); else set(handles.radiobutton1, 'Value', 0); set(handles.radiobutton2, 'Value', 1); end % Method selection if f_handles.CellMatchingModality == 0 set(handles.radiobutton3, 'Value', 1); set(handles.radiobutton4, 'Value', 0); else set(handles.radiobutton3, 'Value', 0); set(handles.radiobutton4, 'Value', 1); end inpImage = imread(f_handles.PathImgCurrent, 1); [rowI, colI, chI] = size(inpImage); numImages = length(imfinfo(f_handles.PathImgCurrent)); % Setting show v = floor(get(f_handles.h_slider1, 'Value')); set(handles.edit01, 'String', num2str(v)); f_handles.TrackFirstPoint = v; set(handles.edit02, 'String', num2str(numImages)); f_handles.TrackLastPoint = numImages; set(handles.edit03, 'String', num2str(f_handles.TrackStepPoint)); %f_handles.TrackStepPoint = 1; % Check parameters if f_handles.CellMaxDisp<1 || f_handles.CellMaxDisp>ceil(min([rowI, colI])) f_handles.CellMaxDisp = ceil(min([rowI, colI])/10); end if f_handles.CellTempSize<1 || f_handles.CellTempSize>ceil(min([rowI, colI])) f_handles.CellTempSize = ceil(min([rowI, colI])/10); end % Set parameters set(handles.edit04, 'String', num2str(f_handles.CellMaxDisp)); set(handles.edit05, 'String', num2str(f_handles.CellTempSize)); catch ME1 Message = {'Wrong parameter set.', ... ' '}; msgbox(Message,'Message') end % --- Outputs from this function are returned to the command line. function varargout = CellTrackerSettingsManual_OutputFcn(hObject, eventdata, handles) % varargout cell array for returning output args (see VARARGOUT); % hObject handle to figure % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Get default command line output from handles structure varargout{1} = handles.output; % --- Executes during object deletion, before destroying properties. function figure1_DeleteFcn(hObject, eventdata, handles) % hObject handle to figure1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % --- Executes when user attempts to close figure1. function figure1_CloseRequestFcn(hObject, eventdata, handles) % hObject handle to figure1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: delete(hObject) closes the figure global f_handles if f_handles.flagGUIclosedWithXrun ~= 0; f_handles.flagGUIclosedWithX = 1; end delete(hObject); % --- Executes on button press in pb_saveSettings. function pb_saveSettings_Callback(hObject, eventdata, handles) % hObject handle to pb_saveSettings (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) %% OK button to save settings global f_handles f_handles.flagGUIclosedWithXrun = 0; try if get(handles.radiobutton1, 'Value')== 1 % Check parameters inpImage = imread(f_handles.PathImgCurrent, 1); [rowI, colI, chI] = size(inpImage); numImages = length(imfinfo(f_handles.PathImgCurrent)); MaxDisp = str2num(get(handles.edit04, 'String')); TempSize = str2num(get(handles.edit05, 'String')); flag_ComputationOn = 1; if MaxDisp<1 || MaxDisp>ceil(min([rowI, colI])) flag_ComputationOn = 0; end if TempSize<1 || TempSize>ceil(min([rowI, colI])) flag_ComputationOn = 0; end if flag_ComputationOn == 1 f_handles.DynamicInterpolation = 1; f_handles.CellMaxDisp = str2num(get(handles.edit04, 'String')); f_handles.CellTempSize = str2num(get(handles.edit05, 'String')); % Update visualization if ishandle(f_handles.h_GUIsetM); close(f_handles.h_GUIsetM); end; else Message = {'Wrong parameter set.', ... ' '}; msgbox(Message,'Message') end else f_handles.DynamicInterpolation = 0; % Update visualization if ishandle(f_handles.h_GUIsetM); close(f_handles.h_GUIsetM); end; end catch ME1 Message = {'Wrong parameter set.', ... ' '}; msgbox(Message,'Message') end % --- Executes during object creation, after setting all properties. function radiobutton1_CreateFcn(hObject, eventdata, handles) % hObject handle to radiobutton1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % --- Executes on button press in radiobutton1. function radiobutton1_Callback(hObject, eventdata, handles) % hObject handle to radiobutton1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of radiobutton1 global f_handles if get(hObject,'Value') == 1 set(handles.radiobutton2, 'Value', 0); f_handles.DynamicInterpolation = 1; else set(handles.radiobutton2, 'Value', 1); f_handles.DynamicInterpolation = 0; end % --- Executes during object creation, after setting all properties. function radiobutton2_CreateFcn(hObject, eventdata, handles) % hObject handle to radiobutton2 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % --- Executes on button press in radiobutton2. function radiobutton2_Callback(hObject, eventdata, handles) % hObject handle to radiobutton2 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of radiobutton2 global f_handles if get(hObject,'Value') == 1 set(handles.radiobutton1, 'Value', 0); f_handles.DynamicInterpolation = 0; else set(handles.radiobutton1, 'Value', 1); f_handles.DynamicInterpolation = 1; end % --- Executes during object creation, after setting all properties. function edit01_CreateFcn(hObject, eventdata, handles) % hObject handle to edit01 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function edit01_Callback(hObject, eventdata, handles) % hObject handle to edit01 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit01 as text % str2double(get(hObject,'String')) returns contents of edit01 as a double global f_handles; f_handles.TrackFirstPoint = str2double(get(hObject,'String')); % --- Executes during object creation, after setting all properties. function edit02_CreateFcn(hObject, eventdata, handles) % hObject handle to edit02 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function edit02_Callback(hObject, eventdata, handles) % hObject handle to edit02 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit02 as text % str2double(get(hObject,'String')) returns contents of edit02 as a double global f_handles; f_handles.TrackLastPoint = str2double(get(hObject,'String')); % --- Executes during object creation, after setting all properties. function edit03_CreateFcn(hObject, eventdata, handles) % hObject handle to edit03 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function edit03_Callback(hObject, eventdata, handles) % hObject handle to edit03 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit03 as text % str2double(get(hObject,'String')) returns contents of edit03 as a double global f_handles; f_handles.TrackStepPoint = str2double(get(hObject,'String')); % --- Executes during object creation, after setting all properties. function edit04_CreateFcn(hObject, eventdata, handles) % hObject handle to edit04 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function edit04_Callback(hObject, eventdata, handles) % hObject handle to edit04 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit04 as text % str2double(get(hObject,'String')) returns contents of edit04 as a double global f_handles; f_handles.CellMaxDisp = str2double(get(hObject,'String')); % --- Executes during object creation, after setting all properties. function edit05_CreateFcn(hObject, eventdata, handles) % hObject handle to edit05 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function edit05_Callback(hObject, eventdata, handles) % hObject handle to edit05 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of edit05 as text % str2double(get(hObject,'String')) returns contents of edit05 as a double global f_handles; f_handles.CellTempSize = str2double(get(hObject,'String')); % --- Executes on button press in radiobutton3. function radiobutton3_Callback(hObject, eventdata, handles) % hObject handle to radiobutton3 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of radiobutton3 global f_handles if get(hObject,'Value') == 1 set(handles.radiobutton4, 'Value', 0); f_handles.CellMatchingModality = 0; else set(handles.radiobutton4, 'Value', 1); f_handles.CellMatchingModality = 1; end % --- Executes on button press in radiobutton4. function radiobutton4_Callback(hObject, eventdata, handles) % hObject handle to radiobutton4 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of radiobutton4 global f_handles if get(hObject,'Value') == 1 set(handles.radiobutton3, 'Value', 0); f_handles.CellMatchingModality = 1; else set(handles.radiobutton3, 'Value', 1); f_handles.CellMatchingModality = 0; end