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lsgrmController.h 4.30 KiB
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#ifndef __LSGRM_CONTROLLER_H
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#define __LSGRM_CONTROLLER_H
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#include "lsgrmGetInternalMemory.h"
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#include "lsgrmSplitter.h"
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#include "lsgrmGraphOperations.h"
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#include "itkObject.h"
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#include "itkMacro.h"
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namespace lsgrm
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{
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template<class TSegmenter>
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class ITK_EXPORT Controller : public itk::Object
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{
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public:
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  /** Standard class typedef */
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  typedef Controller Self;
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  typedef itk::Object                   Superclass;
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  typedef itk::SmartPointer<Self>       Pointer;
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  typedef itk::SmartPointer<const Self> ConstPointer;
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  /** Runtime information support. */
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  itkTypeMacro(Controller, itk::Object);
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  /** Method for creation through the object factory. */
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  itkNewMacro(Self);
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  /* Some convenient typedefs */
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  using SegmenterType = TSegmenter;
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  using ImageType = typename SegmenterType::ImageType;
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  using LabelImageType = typename SegmenterType::LabelImageType;
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  using SegmentationParameterType = typename SegmenterType::ParamType;
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  /* Default constructor and destructor. */
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  Controller();
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  ~Controller();
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  void Modified();
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  void RunSegmentation();
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  void SetSpecificParameters(const SegmentationParameterType& params);
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  void SetInputImage(ImageType * inputImage);
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  void SetInternalMemoryAvailable(long long unsigned int v); // expecting a value in Mbytes.
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  /* Accessors */
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  void SetTilingModeNone(){m_TilingMode = LSGRM_TILING_NONE; Modified();};
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  void SetTilingModeUser(){m_TilingMode = LSGRM_TILING_USER; Modified();};
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  void SetTilingModeAuto(){m_TilingMode = LSGRM_TILING_AUTO; Modified();};
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  typename LabelImageType::Pointer GetLabeledClusteredOutput();
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  std::vector<std::string> GetTemporaryFilesList();
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  itkGetMacro(Margin, unsigned int);
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  itkGetMacro(TemporaryFilesPrefix, std::string);
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  itkSetMacro(TemporaryFilesPrefix, std::string);
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  itkGetMacro(Threshold, float);
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  itkSetMacro(Threshold, float);
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  itkGetMacro(NumberOfIterations, unsigned int);
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  itkSetMacro(NumberOfIterations, unsigned int);
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  itkGetMacro(NbTilesX, unsigned int);
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  itkSetMacro(NbTilesX, unsigned int);
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  itkGetMacro(NbTilesY, unsigned int);
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  itkSetMacro(NbTilesY, unsigned int);
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itkGetMacro(NumberOfFirstIterations, unsigned int); itkSetMacro(NumberOfFirstIterations, unsigned int); itkGetMacro(TileWidth, unsigned int); itkSetMacro(TileWidth, unsigned int); itkGetMacro(TileHeight, unsigned int); itkSetMacro(TileHeight, unsigned int); private: /** Enum for tiling mode */ enum LSGRMTilingMode { LSGRM_TILING_NONE, // No tiling LSGRM_TILING_USER, // User tiling LSGRM_TILING_AUTO // Automatic tiling }; void GetAutomaticConfiguration(); void ComputeMaximumStabilityMargin(unsigned int width, unsigned int height, unsigned int &iter, unsigned int &margin); void CheckMemorySize(); unsigned int GetNodeMemory(); long unsigned int GetMaximumNumberOfNodesInMemory(); /* Parameters given by the user */ std::string m_TemporaryFilesPrefix; // Path used to store intermediate files during the process. ImageType * m_InputImage; // Input image /* Segmentation parameters */ SegmentationParameterType m_SpecificParameters; // Specific parameters float m_Threshold; // Threshold unsigned int m_NumberOfIterations; // Number of iterations /* Parameters given by the user or computed automatically * depending of the chosen mode */ long long unsigned int m_Memory; // RAM available for the computation. unsigned int m_NbTilesX; // number of tiles in x dimension unsigned int m_NbTilesY; // number of tiles in y dimension unsigned int m_NumberOfFirstIterations; // number of iterations in the first step unsigned int m_TileWidth; // regular tile width (i.e. not left tiles) unsigned int m_TileHeight; // regular tile height (i.e. not bottom tiles) /* read-only variables */ LSGRMTilingMode m_TilingMode; // tiling mode (none/user/auto) unsigned int m_Margin; // stability margin related to m_NumberOfFirstIterations std::vector<ProcessingTile> m_Tiles; // list of tiles typename LabelImageType::Pointer m_LabelImage; // output label image }; } // end of namespace lsgrm #include "lsgrmController.txx" #endif