From ca7d43962aa0c94631ab42243ef10c1824ebca8c Mon Sep 17 00:00:00 2001
From: "raffaele.gaetano" <raffaele.gaetano@cirad.fr>
Date: Thu, 2 Apr 2020 11:09:22 +0200
Subject: [PATCH] FIX: avoid setting no-data value on cloud masks when
 clipping.

---
 prepareS2THEIA.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/prepareS2THEIA.py b/prepareS2THEIA.py
index 3323f74..b4e128b 100644
--- a/prepareS2THEIA.py
+++ b/prepareS2THEIA.py
@@ -136,7 +136,8 @@ def prepare(argv):
         out_fn = od + '/' + os.path.splitext(os.path.basename(fn))[0] + '_' + ext + '.tif'
         subprocess.call(clip_cmd + '\"' + fn + '\" \"' + out_fn + '\"', shell=True)
 
-    clip_cmd = 'gdalwarp -q -of GTiff -ot UInt16 -dstnodata 0 -srcnodata 0 -cutline \"' + clip_shp_val + '\" -crop_to_cutline '
+    # clip_cmd = 'gdalwarp -q -of GTiff -ot UInt16 -dstnodata 0 -srcnodata 0 -cutline \"' + clip_shp_val + '\" -crop_to_cutline '
+    clip_cmd = 'gdalwarp -q -of GTiff -ot UInt16 -cutline \"' + clip_shp_val + '\" -crop_to_cutline '
     if srs != None :
         clip_cmd += '-t_srs {} '.format(srs)
     fns = ['CLM_R1', 'CLM_R2']
-- 
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