lsgrmSegmenter.h 6.55 KB
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#ifndef __LSRM_SEGMENTER_H
#define __LSRM_SEGMENTER_H
#include "macro-generator.h"
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#include "grmSegmenter.h"
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#include "lsgrmGraphToOtbImage.h"
namespace lsgrm
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{
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template<class TSegmenterType>
class Segmenter : public TSegmenterType
{
public:

  /* Some convenient typedefs */

  typedef typename TSegmenterType::ImageType ImageType;
  typedef typename TSegmenterType::NodeType NodeType;
  typedef typename TSegmenterType::ParamType ParamType;
  typedef grm::Graph<NodeType> GraphType;
  typedef typename GraphType::EdgeType EdgeType;
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  typedef typename GraphType::EdgeListType EdgeListType;
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  typedef typename grm::GraphOperations<TSegmenterType> GraphOperatorType;
  typedef typename GraphOperatorType::NodePointerType NodePointerType;
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  typedef GraphToOtbImage<GraphType> IOType;
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  typedef typename IOType::LabelImageType LabelImageType;

  ~Segmenter(){};

  /*
   * Given 1 smart node pointer (boost::shared_ptr), this
   * method writes the node specific attributes into the node stream.
   *
   * @params
   * NodePointerType n : Smart pointer of node
   *
   */
  virtual void WriteSpecificAttributes(NodePointerType node, FILE * nodeStream) = 0;

  /*
   * Given 1 smart node pointer (boost::shared_ptr), this
   * method read the node specific attributes from the node stream.
   *
   * @params
   * NodePointerType n : Smart pointer of node
   * FILE * nodeStream : Node stream
   *
   */
  virtual void ReadSpecificAttributes(NodePointerType node, FILE * nodeStream) = 0;

  /*
   * Given 1 smart node pointer (boost::shared_ptr), this
   * method writes the node into a stream.
   *
   * @params
   * NodePointerType n : Smart pointer of node
   * FILE * nodeStream : Node stream
   *
   */
  void WriteNode(NodePointerType node, FILE * nodeStream)
  {
    fwrite(&(node->m_Id), sizeof(node->m_Id), 1, nodeStream);
    fwrite(&(node->m_Perimeter), sizeof(node->m_Perimeter), 1, nodeStream);
    fwrite(&(node->m_Area), sizeof(node->m_Area), 1, nodeStream);
    fwrite(&(node->m_Bbox.m_UX), sizeof(node->m_Bbox.m_UX), 1, nodeStream);
    fwrite(&(node->m_Bbox.m_UY), sizeof(node->m_Bbox.m_UY), 1, nodeStream);
    fwrite(&(node->m_Bbox.m_W), sizeof(node->m_Bbox.m_W), 1, nodeStream);
    fwrite(&(node->m_Bbox.m_H), sizeof(node->m_Bbox.m_H), 1, nodeStream);

    this->WriteSpecificAttributes(node, nodeStream);

    std::size_t contourSize = node->m_Contour.size();
    fwrite(&(contourSize), sizeof(contourSize), 1, nodeStream);
    short moves[contourSize];
    for(unsigned int b = 0; b < contourSize; b++)
      {
      moves[b] = node->m_Contour[b];
      }
    fwrite(moves, sizeof(short), contourSize, nodeStream);
  }

  /*
   * This method reads a graph from a stream.
   *
   * @params
   * FILE * nodeStream : Node stream
   *
   */
  void ReadGraph(FILE * nodeStream, FILE * edgeStream)
  {

    std::unordered_map<long unsigned int, NodePointerType> nodeMap;

    // Read the size of the graph
    {
    std::size_t graphSize;
    fread(&graphSize, sizeof(graphSize), 1, nodeStream);
    this->m_Graph.m_Nodes.reserve(graphSize);

    // Creation of the nodes
    for(std::size_t i = 0; i < graphSize; i++)
      {
      NodePointerType node(new NodeType());

      node->m_Valid = true;
      node->m_Expired = false;
      node->m_IsMerged = true; // force to compute costs for the first iteration

      fread(&(node->m_Id), sizeof(node->m_Id), 1, nodeStream);
      fread(&(node->m_Perimeter), sizeof(node->m_Perimeter), 1, nodeStream);
      fread(&(node->m_Area), sizeof(node->m_Area), 1, nodeStream);
      fread(&(node->m_Bbox.m_UX), sizeof(node->m_Bbox.m_UX), 1, nodeStream);
      fread(&(node->m_Bbox.m_UY), sizeof(node->m_Bbox.m_UY), 1, nodeStream);
      fread(&(node->m_Bbox.m_W), sizeof(node->m_Bbox.m_W), 1, nodeStream);
      fread(&(node->m_Bbox.m_H), sizeof(node->m_Bbox.m_H), 1, nodeStream);

      this->ReadSpecificAttributes(node, nodeStream);

      {
        std::size_t contourSize;
        fread(&(contourSize), sizeof(contourSize), 1, nodeStream);
        short moves[contourSize];
        fread(&moves, sizeof(short), contourSize, nodeStream);
        for(unsigned int b = 0; b < contourSize; b++)
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          {
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          node->m_Contour.push_back(moves[b]);
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          }
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      }
      nodeMap[node->m_Id] = node;
      this->m_Graph.m_Nodes.push_back(node);
      }
    }

    for(auto& node: this->m_Graph.m_Nodes)
      {
      long unsigned int nodeId;
      fread(&(nodeId), sizeof(nodeId), 1, edgeStream);
      assert(nodeId == node->m_Id);

      std::size_t edgeSize;
      fread(&(edgeSize), sizeof(edgeSize), 1, edgeStream);
      node->m_Edges.reserve(edgeSize);
      for(unsigned int b = 0; b < edgeSize; b++)
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        {
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        long unsigned int targetId;
        unsigned int boundary;
        fread(&(targetId), sizeof(targetId), 1, edgeStream);
        fread(&(boundary), sizeof(boundary), 1, edgeStream);
        node->m_Edges.push_back(EdgeType(nodeMap[targetId], 0, boundary));
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        }
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      }

  }

  /*
   * This method writes the edge into a stream.
   *
   * @params
   * EdgePointerType edg : Smart pointer of edge
   *
   */
  void WriteEdge(typename NodeType::CRPTNeighborType edg, FILE * edgeStream)
  {
    fwrite(&(edg.GetRegion()->m_Id), sizeof(edg.GetRegion()->m_Id), 1, edgeStream);
    fwrite(&(edg.m_Boundary), sizeof(edg.m_Boundary), 1, edgeStream);
  }

  /*
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   * Returns the memory (in bytes) occupied by the specific attributes of the node
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   */
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  virtual long long unsigned int GetSpecificAttributesMemory(NodePointerType &node) = 0;
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  /*
   * Returns the memory (in bytes) occupied by the entire graph
   */
  long long unsigned int GetGraphMemory()
  {
    long long unsigned int memory = 0;
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    for(auto& node : this->m_Graph.m_Nodes)
      {
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      // size of the contour (boost::dynamic_bitset)
      memory += sizeof(lp::Contour);
#ifdef ENVIRONMENT64
      memory += 8 * ((node->m_Contour.size() + 63) / 64);
#endif
#ifdef ENVIRONMENT32
      memory += 8 * ((node->m_Contour.size() + 31) / 32);
#endif

      // size of specific attributes
      memory += this->GetSpecificAttributesMemory(node);

      // size of the node pointer
      memory += sizeof(NodePointerType);

      // size of the node (actually, size of the base node)
      memory += sizeof(NodeType);

      // size of the edges
      memory += node->m_Edges.capacity() * sizeof(EdgeType);
      memory += sizeof(EdgeListType);
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      }

    return memory;
  }

  /* Return the label image */
  inline typename LabelImageType::Pointer GetLabeledClusteredOutput()
  {
    IOType io;
    auto labelImg = io.GetLabelImage(this->m_Graph, this->m_ImageWidth, this->m_ImageHeight);
    return labelImg;
  }

};
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} // end of namespace lsgrm
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#endif