From 35a6155f04d887568803f2f1f5a42a6627de7686 Mon Sep 17 00:00:00 2001
From: Decoupes Remy <remy.decoupes@irstea.fr>
Date: Wed, 27 Sep 2023 14:24:10 +0200
Subject: [PATCH] Error of jupyterhub at start
---
Dockerfile_jupyterhub | 20 ++++++++++++++------
environment_jupyterhub.yml | 8 ++------
2 files changed, 16 insertions(+), 12 deletions(-)
diff --git a/Dockerfile_jupyterhub b/Dockerfile_jupyterhub
index 8b1d63a..380072b 100644
--- a/Dockerfile_jupyterhub
+++ b/Dockerfile_jupyterhub
@@ -8,22 +8,30 @@ ARG env_name=rs-notebooks
ADD *.ipynb /notebooks/
ADD sample.geojson /notebooks/
+# creating user
+RUN useradd -m beyond &&\
+ chown -R beyond:beyond /notebooks
+
# creating environment
ADD environment_jupyterhub.yml ${dest_yml}
+
RUN mamba env create --file ${dest_yml} --name ${env_name}
-# setting up shell to run in the correct environment
-SHELL ["conda", "run", "-n", "rs-notebooks", "/bin/bash", "-c"]
+# setting up shell to use conda run
+# this ensures that the CMD command is run in the correct environment
+SHELL ["conda", "run", "--no-capture-output","-n", "rs-notebooks", "/bin/bash", "-c"]
# setting up jupyter lab to use bash as a terminal
# this ensures that the right environment is activated in the terminal
# should allow users to run pip installs from notebooks/jupyter lab terminal
# without encountering issues with different environments
-#RUN /opt/conda/envs/rs-notebooks/bin/jupyter lab --generate-config && \
-#RUN jupyter lab --generate-config && \
-# echo 'c.NotebookApp.terminado_settings = { "shell_command": ["/bin/bash"] }' >> /root/.jupyter/jupyter_lab_config.py
+RUN jupyter lab --generate-config && \
+ echo 'c.NotebookApp.terminado_settings = { "shell_command": ["/bin/bash"] }' >> /root/.jupyter/jupyter_lab_config.py
# setting up default landing folder
WORKDIR /notebooks
-CMD jupyterhub-singleuser
+# choosing new user as default
+USER beyond
+
+CMD jupyterhub-singleuser
\ No newline at end of file
diff --git a/environment_jupyterhub.yml b/environment_jupyterhub.yml
index ca8dbd8..5f6a85b 100644
--- a/environment_jupyterhub.yml
+++ b/environment_jupyterhub.yml
@@ -10,16 +10,12 @@ dependencies:
- matplotlib
- folium
- rioxarray
- - jupyterhub-singleuser=3.0.0
+ - jupyterhub==4.0.2
+ - jupyterlab
- pip
- pip:
- planetary-computer
- pystac-client
- # with planetary-computer and pystac-client
- # jsonschema==4.17.3 gets installed and breaks jupyter
- # might be fixed in later version of jupyter, planetary-computer
- # or pystac-client
- - jsonschema==4.19.0
- rich
- stackstac
- bottleneck
--
GitLab