#!/usr/bin/python3 # -*- coding: utf-8 -*- """ Copyright (c) 2020-2022 INRAE Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. """ """ Compute the number of S1 and S2 images used for each patch. """ import os import argparse import logging import numpy as np from decloud.core import system, raster from decloud.acquisitions.acquisition_factory import AcquisitionFactory from decloud.core.tile_io import TilesLoader from decloud.core.dataset import RoisLoader import decloud.preprocessing.constants as constants parser = argparse.ArgumentParser(description="Patches coverage analysis") parser.add_argument("--acquisition_layouts", nargs='+', required=True, help="Path to acquisition layout file (.json)") parser.add_argument("--tiles", required=True, help="Path to tile handler file (.json)") parser.add_argument("--out_dir", required=True, help="Output directory for generated stats files") parser.add_argument("--patch_size", type=int, default=256) parser.add_argument("--rois", help="Path to a .json file used to instantiate the RoisLoader") parser.add_argument("--roi_key", help="ROI key (roi_valid or roi_train)", default="roi_train") params = parser.parse_args() system.basic_logging_init() # Acquisitions layout als = [(system.basename(fn)[:-5], AcquisitionFactory.get_acquisition(fn)) for fn in params.acquisition_layouts] # Tiles handlers th = TilesLoader(params.tiles, patchsize_10m=params.patch_size) # Tiles ROIs rois = RoisLoader(the_json=params.rois) if params.rois else None # Compute scale = float(params.patch_size) / float(constants.PATCHSIZE_REF) for al_bname, al in als: for tile_name, tile_handler in th.items(): # Output files prefix out_prefix = os.join(params.out_dir, tile_name + "_" + al_bname) # Reference raster grid ref_fn = tile_handler.s2_images[0].clouds_stats_fn # Accumulators ref_np_arr = tile_handler.s2_images_validity[0, :, :] np_counts = {key: np.zeros_like(ref_np_arr, dtype=np.float32) for key in ["s1", "s2"]} count_map = dict() # Search patches roi = rois[params.roi_key][tile_name] if rois else None tuple_search = tile_handler.tuple_search(acquisitions_layout=al, roi=roi) # Number of patches logging.info("Counting patches...") for pos, pos_list in tuple_search.items(): # pos: the location of the patch. e.g. (12, 1) for sample_dict in pos_list: def _store_index(_key, idx): np_counts[key][pos[0], pos[1]] += 1 if pos not in count_map: count_map[pos] = dict() if _key in count_map[pos]: count_map[pos][_key].append(idx) else: count_map[pos][key] = [idx] for acq_key, acq_dict in sample_dict.items(): # acq_key: the acquisition key. e.g. "s1_tm1", "s2_target", etc for key in ["s1", "s2"]: if key in acq_dict: _store_index(key, acq_dict[key]) # Export for key in ["s1", "s2"]: out_fn = f"{out_prefix}_{key}_freq.tif" logging.info("Saving %s", out_fn) raster.save_numpy_array_as_raster(ref_fn=ref_fn, np_arr=np_counts[key], out_fn=out_fn, scale=scale)