chain_setup.cfg

#BEGIN CONFIGURATION

[GENERAL CONFIGURATION]

BASEFOLDER: /home/raffaele/Data/Koumbia/2016
EXTENT: /home/raffaele/Data/Koumbia/Extent/koumbia_buf.shp
REFERENCE: /home/raffaele/Data/Koumbia/GT/GT_FINAL.shp
CHAINNAME: OUT
SETUPNAME: S2_L8

#Chain mode: 0 for Validation only, 1 for Map only, 2 for Both, -K for K-Fold cross validation
#In cross-validation mode, only REFERENCE is used to generate folds and VALIDMODE is always 1.
CHAINMODE: 1
FORCESAMPLEGEN: NO
VALIDATION: /home/raffaele/Data/Koumbia/GT/GT_VALID.shp
#Validation mode: 0 - Pixel, 1 - Vector (surface)
VALIDMODE: 1

#Number of parallel processes (only affects zonal statistics)
NPROCESSES: 4

[SENTINEL-2 CONFIGURATION]

#Naming
REFLECTANCE: *STACK_*.tif
VALIDITYMASK: *MASK_*.tif
GAPMASK: *GAPMASK_*.tif

#Band Mapping
B01: 
B02: 1
B03: 2
B04: 3
B05: 4
B06: 5
B07: 6
B08: 7
B8A: 8
B09: 
B10: 
B11: 9
B12: 10

#Selected bands and radiometric indices to compute as features
#current available indices : NDVI, NDWI, BRI, MNDWI, SWNDVI, NDRE (ndvi using red edge)
FEAT: B02,B03,B04,B05,B06,B07,B08,B8A,B11,B12,NDVI,NDWI,BRI,MNDWI,SWNDVI,NDRE

#GapFilling Setup
#Mode NONE : no gapfilling (clouds filled with R-like rough-fix strategy)
#Mode BASE : gapfilling on reflectance values prior to feature computation  --> NOT IMPLEMENTED
#Mode FEATURE : independent feature-wise gapfilling
GAPFILLINGMODE: FEATURE
MINVIEWS: 2

[SENTINEL-2 THEIA CONFIGURATION]

#Naming
REFLECTANCE: *_FRE_STACK_*.tif
VALIDITYMASK: *_FRE_MASK_*.tif
GAPMASK: *_FRE_GAPMASK_*.tif

#Band Mapping
B2: 1
B3: 2
B4: 3
B5: 4
B6: 5
B7: 6
B8: 7
B8A: 8
B11: 9
B12: 10

#Selected bands and radiometric indices to compute as features
#current available indices : NDVI, NDWI, BRI, MNDWI, SWNDVI, NDRE (red edge)
FEAT: B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12,NDVI,NDWI,BRI,MNDWI,SWNDVI,NDRE

#GapFilling Setup
#Mode NONE : no gapfilling (clouds filled with R-like rough-fix strategy)
#Mode BASE : gapfilling on reflectance values prior to feature computation  --> NOT IMPLEMENTED
#Mode FEATURE : independent feature-wise gapfilling
GAPFILLINGMODE: FEATURE
MINVIEWS: 2

[LANDSAT 8 CONFIGURATION]

#Naming
REFLECTANCE: *_PS_TOA_*.TIF
VALIDITYMASK: *_MASK_HR_*.TIF
GAPMASK: *_GAPMASK_*.TIF

#Band Mapping
B1: 1
B2: 2
B3: 3
B4: 4
B5: 5
B6: 6
B7: 7
B9: 8
B10:
B11:

#Selected bands and radiometric indices to compute as features
#current available indices : NDVI, NDWI, BRI, MNDWI, SWNDVI
FEAT: B1,B2,B3,B4,B5,B6,B7,NDVI,NDWI,BRI,MNDWVI,SWNDVI

#GapFilling Setup
#Mode NONE : no gapfilling (clouds filled with R-like rough-fix strategy)
#Mode BASE : gapfilling on reflectance values prior to feature computation  --> no use here, USE 'cloudfreeComposites'
#Mode FEATURE : independent feature-wise gapfilling
GAPFILLINGMODE: FEATURE
MINVIEWS: 2

[VENUS THEIA CONFIGURATION]

#Naming
REFLECTANCE: STACK_*.tif
VALIDITYMASK: MASK_*.tif
GAPMASK: GAPMASK_*.tif

#Band Mapping
B01: 1
B02: 2
B03: 3
B04: 4
B05: 5
B06: 6
B07: 7
B08: 8
B09: 9
B10: 10
B11: 11
B12: 12

#Selected bands and radiometric indices to compute as features
#current available indices : NDVI, NDWI, BRI, RNDVI (red edge)
#FEAT: B01,B02,B03,B04,B05,B06,B07,B08,B09,B10,B11,B12,NDVI,NDWI,BRI,NDRE
FEAT: B01,B02,B03,B04,B06,B07,B08,B09,B10,B11,B12,NDVI,NDWI,BRI,NDRE

#GapFilling Setup
#Mode NONE : no gapfilling (clouds filled with R-like rough-fix strategy)
#Mode BASE : gapfilling on reflectance values prior to feature computation  --> NOT IMPLEMENTED
#Mode FEATURE : independent feature-wise gapfilling
GAPFILLINGMODE: NONE
MINVIEWS: 2

[VHR SCENE CONFIGURATION]

#Naming
PANFOLDER: /home/raffaele/Data/Koumbia/2016/SPOT6/IMG_SPOT6_P_001_A
MSFOLDER: /home/raffaele/Data/Koumbia/2016/SPOT6/IMG_SPOT6_MS_001_A

#Usage
TOA: YES
PANSHARPENING: YES

#Segmentation Parameters (Baatz & Schaepe)
SCALE: 250
SHAPE: 0.7
COMPACTNESS: 0.9
MEMLIMIT: OFF

#Area threshold for GT sample generation
GTAREATHRESH: 225

[VHR-SITS COREGISTRATION]

COREGISTER: YES
FORCE: NO

#Select band to be used for homologous points extraction
VHRBAND: 1
S2BAND: 3
L8BAND: 4
VENUSBAND: 6

#Maximum number of GCPs (-1 unlimited)
MAXPOINTS: -1

[TRAINING CONFIGURATION]

HIERARCHICALCLASSIF: NO
CLASSCODE: Code_CG
PARAMETERS: -classifier rf -classifier.rf.max 10 -classifier.rf.nbtrees 400

#Compute feature importance on REFERENCE
RFIMPORTANCE: YES
RFIMPNTREES: 400
RFIMPNODESIZE: 25
RFIMPMAXFEAT: 0
RFIMPNRUNS: 1

[CLASSIFICATION OUTPUT CONFIGURATION]

CONFIDENCE: YES

#Produce a full raster output: NO / VRT / FULL
RASTERIZE: VRT

[ADDITIONAL FEATURES]

USERFEATLIST:

#END CONFIGURATION